Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_O20
(568 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z77657-6|CAB01150.2| 607|Caenorhabditis elegans Hypothetical pr... 30 1.0
Z72514-9|CAA96680.3| 449|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z68001-3|CAO78709.1| 449|Caenorhabditis elegans Hypothetical pr... 29 2.3
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 28 4.1
U39652-2|AAA80404.1| 817|Caenorhabditis elegans Hypothetical pr... 28 5.4
U21308-15|AAB93316.2| 412|Caenorhabditis elegans Hypothetical p... 28 5.4
Z49911-10|CAA90134.1| 471|Caenorhabditis elegans Hypothetical p... 27 7.1
Z49909-18|CAA90117.1| 471|Caenorhabditis elegans Hypothetical p... 27 7.1
U28991-2|AAK68307.1| 679|Caenorhabditis elegans Kinesin-associa... 27 7.1
AF045639-7|AAX22297.1| 179|Caenorhabditis elegans Hypothetical ... 27 7.1
AB017107-1|BAA88838.1| 679|Caenorhabditis elegans Kinesin assoc... 27 7.1
Z99772-1|CAB16921.1| 794|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z75550-14|CAA99932.1| 794|Caenorhabditis elegans Hypothetical p... 27 9.4
Z47073-4|CAM33507.1| 954|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z47073-3|CAA87374.1| 999|Caenorhabditis elegans Hypothetical pr... 27 9.4
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 27 9.4
M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen ... 27 9.4
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 27 9.4
AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical ... 27 9.4
>Z77657-6|CAB01150.2| 607|Caenorhabditis elegans Hypothetical
protein F08H9.1 protein.
Length = 607
Score = 30.3 bits (65), Expect = 1.0
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Frame = +1
Query: 337 EEGDDPHIVEDRNRLKAKIDE----DMG-MKVLERPQFDVAPSVSSSRGPSKPPV-DAIX 498
EE D+ E RNRLKA+++ D+ MK + P D +P ++ P + + +
Sbjct: 420 EEEDEDEETERRNRLKAELEPLETIDLSQMKFMTTPLKDKSPILTPVHRPEEIEFREELE 479
Query: 499 EPAVRNFAAKDASPAGPK 552
P F + +P PK
Sbjct: 480 LPRFEQFEPMNVNPISPK 497
>Z72514-9|CAA96680.3| 449|Caenorhabditis elegans Hypothetical
protein T10B10.8 protein.
Length = 449
Score = 29.1 bits (62), Expect = 2.3
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = +1
Query: 352 PHIVED--RNRLKAKIDEDMGMKVLERPQFDVAPSV-SSSRGPSKP 480
PH E+ NRL A+ + D+GM L + V P++ + GP+KP
Sbjct: 199 PHTCENYSMNRLSAQFNYDIGMYYLNNGRLLVDPAIFHYTLGPTKP 244
>Z68001-3|CAO78709.1| 449|Caenorhabditis elegans Hypothetical
protein T10B10.8 protein.
Length = 449
Score = 29.1 bits (62), Expect = 2.3
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = +1
Query: 352 PHIVED--RNRLKAKIDEDMGMKVLERPQFDVAPSV-SSSRGPSKP 480
PH E+ NRL A+ + D+GM L + V P++ + GP+KP
Sbjct: 199 PHTCENYSMNRLSAQFNYDIGMYYLNNGRLLVDPAIFHYTLGPTKP 244
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical
protein C50F7.5 protein.
Length = 309
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = +1
Query: 421 ERPQFDVAPSVSSS-RGPSKP-PVDAIXEPAVRNFAAKDASPAGPKPXG 561
E PQ V PS GP P PVD +P ++D P+GP G
Sbjct: 131 EDPQPSVEPSEDHQPSGPPSPGPVDPSEDPQPSVEPSEDPQPSGPPSPG 179
>U39652-2|AAA80404.1| 817|Caenorhabditis elegans Hypothetical
protein R07E4.5 protein.
Length = 817
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/61 (27%), Positives = 25/61 (40%)
Frame = +1
Query: 322 IVRHGEEGDDPHIVEDRNRLKAKIDEDMGMKVLERPQFDVAPSVSSSRGPSKPPVDAIXE 501
I+R E D D LKAK++E K+ E + + P+ PP+D
Sbjct: 413 ILRLREFDKDDKTYYDEETLKAKLEEHAVKKLEEEKDKLQSAAAPEDDSPASPPMDCPAS 472
Query: 502 P 504
P
Sbjct: 473 P 473
>U21308-15|AAB93316.2| 412|Caenorhabditis elegans Hypothetical
protein ZK1290.10 protein.
Length = 412
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +1
Query: 403 MGMKVLERPQFDVAPSVSSSRGPSKPPVDAIXEPAVRNFAAKDASPAGPKP 555
+G+ +++ + P S + P+ PP + PA+R AK S P+P
Sbjct: 72 IGLPIIQITTKEPQPPASLTSLPAAPPSAQVAPPAIRPPEAKRTSLEPPQP 122
>Z49911-10|CAA90134.1| 471|Caenorhabditis elegans Hypothetical
protein C14A4.13 protein.
Length = 471
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = +1
Query: 439 VAPSVSSSRGPSKPPVDAIXEPAVRNFAAKDASPAGPKPXGS 564
+A S KPPV AI P + + + A+P P S
Sbjct: 420 IARSPIGQNTTMKPPVTAIPRPPIEKHSVRKAAPVAHSPRKS 461
>Z49909-18|CAA90117.1| 471|Caenorhabditis elegans Hypothetical
protein C14A4.13 protein.
Length = 471
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = +1
Query: 439 VAPSVSSSRGPSKPPVDAIXEPAVRNFAAKDASPAGPKPXGS 564
+A S KPPV AI P + + + A+P P S
Sbjct: 420 IARSPIGQNTTMKPPVTAIPRPPIEKHSVRKAAPVAHSPRKS 461
>U28991-2|AAK68307.1| 679|Caenorhabditis elegans Kinesin-associated
protein protein1, isoform b protein.
Length = 679
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/48 (22%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -2
Query: 327 NDTDHRKVSHIVLSEWRRH*QLWTRFLNTFVH--IVNTVIHTARTFKF 190
N+T ++ + +W++H ++ T +N F+ VN + H + + F
Sbjct: 150 NETLMMALARVFREDWKKHFEVGTNIMNLFIGTLCVNAMEHETKRYDF 197
>AF045639-7|AAX22297.1| 179|Caenorhabditis elegans Hypothetical
protein B0212.6 protein.
Length = 179
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 349 RHLLRHAERYRPQESLPHRFERVAEALT 266
R +L H E P +LP RFER+A +T
Sbjct: 34 REILSHTET-TPTRTLPTRFERMASQMT 60
>AB017107-1|BAA88838.1| 679|Caenorhabditis elegans Kinesin
associated protein kap-1 protein.
Length = 679
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/48 (22%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -2
Query: 327 NDTDHRKVSHIVLSEWRRH*QLWTRFLNTFVH--IVNTVIHTARTFKF 190
N+T ++ + +W++H ++ T +N F+ VN + H + + F
Sbjct: 150 NETLMMALARVFREDWKKHFEVGTNIMNLFIGTLCVNAMEHETKRYDF 197
>Z99772-1|CAB16921.1| 794|Caenorhabditis elegans Hypothetical
protein H05L14.1 protein.
Length = 794
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 471 GTSRRRYRRCNIKLRSLENFHAHV 400
G S R+ RCN+ ++ ENF HV
Sbjct: 329 GLSWRKSPRCNMMIKEKENFKYHV 352
>Z75550-14|CAA99932.1| 794|Caenorhabditis elegans Hypothetical
protein H05L14.1 protein.
Length = 794
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 471 GTSRRRYRRCNIKLRSLENFHAHV 400
G S R+ RCN+ ++ ENF HV
Sbjct: 329 GLSWRKSPRCNMMIKEKENFKYHV 352
>Z47073-4|CAM33507.1| 954|Caenorhabditis elegans Hypothetical protein
ZC506.4b protein.
Length = 954
Score = 27.1 bits (57), Expect = 9.4
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Frame = -2
Query: 567 IRPVW---FRTSRRCVFSCEVPNSGLLYCVNRRLAGTSRRRYRRCNIKLRSL-ENFHAHV 400
+ P W + T + V +C VP+ LY + G +K R + ENF+
Sbjct: 768 VPPGWRHHYPTRDQVVLTCNVPDHHFLYSL--AYDGFLIVLCTTYAVKTRKVPENFNETK 825
Query: 399 FVYLSLKSVSVLNYVWVVTFFAMPND 322
F+ S+ + V+ W+ FF +D
Sbjct: 826 FIGFSMYTTCVVWLSWIFFFFGTGSD 851
>Z47073-3|CAA87374.1| 999|Caenorhabditis elegans Hypothetical protein
ZC506.4a protein.
Length = 999
Score = 27.1 bits (57), Expect = 9.4
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Frame = -2
Query: 567 IRPVW---FRTSRRCVFSCEVPNSGLLYCVNRRLAGTSRRRYRRCNIKLRSL-ENFHAHV 400
+ P W + T + V +C VP+ LY + G +K R + ENF+
Sbjct: 813 VPPGWRHHYPTRDQVVLTCNVPDHHFLYSL--AYDGFLIVLCTTYAVKTRKVPENFNETK 870
Query: 399 FVYLSLKSVSVLNYVWVVTFFAMPND 322
F+ S+ + V+ W+ FF +D
Sbjct: 871 FIGFSMYTTCVVWLSWIFFFFGTGSD 896
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein
34 protein.
Length = 299
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 466 GPSKPPVDAIXEPAVRNFAAKDASPAGPKPXG 561
GP PP D+ EP +DA+P P P G
Sbjct: 157 GPPGPPGDS-GEPGSPGLPGQDAAPGEPGPKG 187
>M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen
protein.
Length = 298
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 466 GPSKPPVDAIXEPAVRNFAAKDASPAGPKPXG 561
GP PP D+ EP +DA+P P P G
Sbjct: 157 GPPGPPGDS-GEPGSPGLPGQDAAPGEPGPKG 187
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular
collagen RAM-4 protein.
Length = 299
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 466 GPSKPPVDAIXEPAVRNFAAKDASPAGPKPXG 561
GP PP D+ EP +DA+P P P G
Sbjct: 157 GPPGPPGDS-GEPGSPGLPGQDAAPGEPGPKG 187
>AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical
protein E01A2.4 protein.
Length = 504
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 486 NRRLAGTSRRRYRRCNIKLRSLENFHAH 403
NRR S+RR++R NI+ L N H
Sbjct: 196 NRRAEMWSKRRFQRVNIQADGLNNIWGH 223
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.141 0.426
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,836,360
Number of Sequences: 27780
Number of extensions: 231085
Number of successful extensions: 778
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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