Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_O19
(790 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0269 - 16617292-16618852,16622763-16623562 31 1.0
10_08_0429 + 17845303-17845431,17845508-17845684,17845782-178458... 29 4.2
08_02_1470 - 27350173-27350643,27350721-27351167 29 5.6
12_02_0318 - 17457182-17462232,17462745-17462955,17463356-174634... 28 7.4
06_01_0263 + 1936927-1936936,1937031-1937305,1937727-1938079,193... 28 7.4
12_02_0266 - 16582912-16584918,16585041-16585229 28 9.7
02_05_0694 - 30984408-30985160,30985357-30985487,30985586-30985853 28 9.7
>12_02_0269 - 16617292-16618852,16622763-16623562
Length = 786
Score = 31.1 bits (67), Expect = 1.0
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +2
Query: 425 NPNIALYDMIMQLAPNELGSLLNPCILYMRQEVVGVDALKLKSLR 559
NPN I++L+ N L S L C LY+ D +K S+R
Sbjct: 401 NPNSKWMKHILKLSYNNLSSDLKTCFLYLHMYPENYDIMKKDSMR 445
>10_08_0429 + 17845303-17845431,17845508-17845684,17845782-17845895,
17846386-17846520,17847659-17847790,17847919-17848071,
17848574-17848709,17849338-17849443,17849538-17849730,
17849803-17849963,17850227-17850442,17850732-17850997,
17851505-17851779,17851871-17852327,17853973-17854055,
17854260-17854469,17854897-17855373,17855462-17855743,
17855910-17856236,17856418-17856507,17856788-17856899,
17857004-17857104,17857524-17857568
Length = 1458
Score = 29.1 bits (62), Expect = 4.2
Identities = 34/136 (25%), Positives = 49/136 (36%), Gaps = 3/136 (2%)
Frame = +2
Query: 392 LEDGERRTADFNPNIALYDMIMQLAPNELGSLLNPCILYMRQEVVGVDALKLKSLRHLGL 571
+ D E A N ++ ++++ + L Y R E +G L L RHL
Sbjct: 1101 INDIEELEAKLKYNFSVKGLLLEAITHPSLQELGVDYCYQRLEFLGDSVLDLLLTRHLYA 1160
Query: 572 IKGKAILRLLNKLEDARQAN---VSAVYRCPISENKNKGSDIQLEKNTPDESISLPGPSV 742
L L A +N AV R I + GS I LE+ T +L
Sbjct: 1161 THTDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQHGSGILLEQITEYVRSNLECQGK 1220
Query: 743 PINFLSEPTAKTLKIV 790
FL T K K++
Sbjct: 1221 ESEFLQHTTCKVPKVL 1236
>08_02_1470 - 27350173-27350643,27350721-27351167
Length = 305
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/73 (17%), Positives = 35/73 (47%)
Frame = +2
Query: 158 NGRRHKVHCTPDTSMLQILEDACQKQGFQPSDYNLKFHNQIMDLTTTIRFSNVPNRATLE 337
NG H+++ S ++ + +K G P D + + ++ D + + V +R+ +
Sbjct: 49 NGVYHEIYINSQASFGELKKLLSEKTGLHPDDQKVVYRDKERDSKAFLDIAGVKDRSKML 108
Query: 338 MVECETRREESIV 376
++E T + + ++
Sbjct: 109 LLEDPTAQAKRLL 121
>12_02_0318 -
17457182-17462232,17462745-17462955,17463356-17463403,
17466161-17466346
Length = 1831
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 755 RN*WEQRVLAMKWIHQXCSSLIVCHFLY 672
RN +E A K I++ S++ CHFLY
Sbjct: 649 RNLYEYAFAASKTIYKASSAIAYCHFLY 676
>06_01_0263 +
1936927-1936936,1937031-1937305,1937727-1938079,
1938598-1938715,1938823-1938946,1939389-1939608,
1939948-1940017,1940083-1940136,1940536-1940604,
1941138-1941194,1941503-1941575,1942037-1942080,
1942629-1942751,1943092-1943321,1943552-1943660,
1944196-1944339,1944443-1944604,1944921-1945197,
1945326-1945486,1945591-1945782,1946789-1946971,
1946986-1947063,1947187-1947366,1947476-1947562
Length = 1130
Score = 28.3 bits (60), Expect = 7.4
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +2
Query: 173 KVHCTPDTSMLQILEDACQKQGFQPSDY 256
+ HC+P S+L +++AC+ G + Y
Sbjct: 330 RFHCSPSLSLLPPIKEACEAFGIMKNSY 357
>12_02_0266 - 16582912-16584918,16585041-16585229
Length = 731
Score = 27.9 bits (59), Expect = 9.7
Identities = 22/92 (23%), Positives = 42/92 (45%)
Frame = +2
Query: 353 TRREESIVTIGLMLEDGERRTADFNPNIALYDMIMQLAPNELGSLLNPCILYMRQEVVGV 532
++RE + + L +++ + NPN I++L+ N L L C+LY+ +
Sbjct: 178 SQREVNKLDNWLKIKNSMGFELETNPNSKWMKHILKLSYNNLSWDLKTCLLYLHMYPENI 237
Query: 533 DALKLKSLRHLGLIKGKAILRLLNKLEDARQA 628
+ +K K L + +G R LED ++
Sbjct: 238 NIMK-KDLVRQWIAEGFITQRDNRDLEDIAES 268
>02_05_0694 - 30984408-30985160,30985357-30985487,30985586-30985853
Length = 383
Score = 27.9 bits (59), Expect = 9.7
Identities = 20/59 (33%), Positives = 25/59 (42%)
Frame = -2
Query: 771 AVGSDKKLMGTEGPGNEMDSSGVFFSNCMSLPLFLFSDIGQRYTADTFACLASSNLFSS 595
A K + G GN +S + +S LFL SD G D FA L SN +S
Sbjct: 148 AATKSKMMSNGGGDGNSSSASASAIDDLLSKSLFLISDGGN----DLFAFLRQSNRTAS 202
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,931,022
Number of Sequences: 37544
Number of extensions: 367872
Number of successful extensions: 899
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -