Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_O18
(645 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch... 80 2e-16
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces... 69 6e-13
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc... 67 2e-12
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi... 64 2e-11
SPBC3F6.01c |||serine/threonine protein phosphatase |Schizosacch... 64 2e-11
SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyc... 57 3e-09
SPAC2F3.02 |||ER protein translocation subcomplex subunit|Schizo... 52 5e-08
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi... 48 2e-06
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha... 39 7e-04
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 30 0.33
SPBC577.15c |||NASP family histone binding protein|Schizosacchar... 29 0.43
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 29 0.76
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 28 1.3
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 27 1.8
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 27 1.8
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ... 27 1.8
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 27 2.3
SPBC582.07c |rpn7||19S proteasome regulatory subunit Rpn7|Schizo... 27 3.1
SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit Ssr3|Schizos... 27 3.1
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa... 27 3.1
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 26 4.0
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c... 26 4.0
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 26 5.3
SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l... 26 5.3
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual 25 7.1
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 25 9.3
SPBC365.13c |hba1|caf1|Ran GTPase binding protein Hba1|Schizosac... 25 9.3
>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 80.2 bits (189), Expect = 2e-16
Identities = 43/126 (34%), Positives = 71/126 (56%)
Frame = +1
Query: 37 ESYKNKGNDAFKSENYQEAITFYTKAINLAEKGSRDLATYLKNRAAAYLKTKEFEKVISD 216
E+ KN+GND F+ NYQ+A Y++A+ + +A NRA L+ K E+ +SD
Sbjct: 224 ENTKNQGNDLFRQGNYQDAYEKYSEALQIDPDNKETVAKLYMNRATVLLRLKRPEEALSD 283
Query: 217 CDKALEIIPEDPKALFRRSQAFECLERFEEAYRDAKTIFTVDPTNKAVQPILSRLHTVVQ 396
D AL I K L R++A E LE++EEA RD ++ +D ++ ++ L RL ++
Sbjct: 284 SDNALAIDSSYLKGLKVRAKAHEALEKWEEAVRDVQSAIELDASDANLRQELRRLQLELK 343
Query: 397 ERARQN 414
+ R++
Sbjct: 344 KSKRKD 349
Score = 64.9 bits (151), Expect = 9e-12
Identities = 38/92 (41%), Positives = 50/92 (54%)
Frame = +1
Query: 34 AESYKNKGNDAFKSENYQEAITFYTKAINLAEKGSRDLATYLKNRAAAYLKTKEFEKVIS 213
AE K GN +K + Y EAI YT+AI+L + LA Y NRAA Y++ EFE +
Sbjct: 23 AEKQKAIGNAFYKEKKYAEAIKAYTEAIDLGSDSA--LAIYYSNRAATYMQIGEFELALC 80
Query: 214 DCDKALEIIPEDPKALFRRSQAFECLERFEEA 309
D ++ I P+ PK R QA+E L EA
Sbjct: 81 DAKQSDRIKPDVPKTQSRIRQAYEGLSILNEA 112
>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 591
Score = 68.9 bits (161), Expect = 6e-13
Identities = 60/191 (31%), Positives = 93/191 (48%), Gaps = 6/191 (3%)
Frame = +1
Query: 31 EAESYKNKGNDAFKSENYQEAITFYTKAINLAEKGSRDLATYLKNRAAAYLKTKEFEKVI 210
+AE + KGN+ FKS ++ AI YT+ A R NRAAAYLK + I
Sbjct: 398 KAEESRVKGNELFKSGDFANAIKEYTEMTKRAPSDPRGFG----NRAAAYLKVMAPAECI 453
Query: 211 SDCDKALEIIPEDPKALFRRSQAFECLERFE---EAYRDAKTIFTVDP-TNKAVQPILSR 378
DC+KA+E+ P KA R++QA L+ + +A +A + +P T K ++ I S+
Sbjct: 454 RDCNKAIELDPNFAKAYVRKAQALFMLKDYNKCIDACNEASEVDRREPNTGKNLREIESQ 513
Query: 379 LHTVVQERARQNAQTSNKVEQMFKLAFGLGEDIEKREKAMANLLVLAKENSGA--EVMLK 552
L + A Q Q + E M ++ ++ AM +L A+EN A E M
Sbjct: 514 LSKCMSAMASQR-QNETEEETMARIQKDPEVLGILQDPAMQAILGQARENPAALMEHMKN 572
Query: 553 NGVVQRIQQLL 585
V +I++L+
Sbjct: 573 PTVKSKIEKLI 583
Score = 42.3 bits (95), Expect = 6e-05
Identities = 24/71 (33%), Positives = 39/71 (54%)
Frame = +1
Query: 22 VQXEAESYKNKGNDAFKSENYQEAITFYTKAINLAEKGSRDLATYLKNRAAAYLKTKEFE 201
++ +A+ K GN+ +K N+ AI Y KA + +D+ TYL N AAAY + + +
Sbjct: 261 LKKKADQEKQIGNENYKKRNFPVAIEQYKKAWDTY----KDI-TYLNNLAAAYFEADQLD 315
Query: 202 KVISDCDKALE 234
I C+ A+E
Sbjct: 316 DCIKTCEDAIE 326
>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 358
Score = 66.9 bits (156), Expect = 2e-12
Identities = 40/119 (33%), Positives = 68/119 (57%), Gaps = 3/119 (2%)
Frame = +1
Query: 34 AESYKNKGNDAFKSENYQEAITFYTKAINLAEK-GSRDL--ATYLKNRAAAYLKTKEFEK 204
A++++ GN+ F S+ Y++A FYTKA LA+K G +D+ A Y NRAA L + + +
Sbjct: 64 AQNFREHGNECFASKRYKDAEEFYTKA--LAQKCGDKDIEIACY-SNRAACNLLFENYRQ 120
Query: 205 VISDCDKALEIIPEDPKALFRRSQAFECLERFEEAYRDAKTIFTVDPTNKAVQPILSRL 381
V++DC + L+ KA +R ++A L+R++EA + V P + A+ + L
Sbjct: 121 VLNDCAQVLQRDSTHAKAYYRSAKALVALKRYDEAKECIRLCSLVHPNDPAILALSKEL 179
>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
Tom70|Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 64.1 bits (149), Expect = 2e-11
Identities = 44/124 (35%), Positives = 62/124 (50%), Gaps = 1/124 (0%)
Frame = +1
Query: 34 AESYKNKGNDAFKSENYQEAITFYTKAINLAEKGSRDLATYLKNRAAAYLKTKEFEKVIS 213
A K GN A+ + Y AI +YT+AI S D + NRAA Y +FE+VI
Sbjct: 151 AAELKTLGNKAYGQKEYANAIDYYTQAITC----SHD-PIFFSNRAACYAAIGDFEQVIK 205
Query: 214 DCDKALEIIPEDPKALFRRSQAFECLERFEEAYRDAKTIFTVDP-TNKAVQPILSRLHTV 390
D +AL + KAL RRS A+E L + +EA D+ D N+++ + RL
Sbjct: 206 DTSEALSLDSSYVKALNRRSAAYEQLGKLDEALMDSTVSCIFDGFANESMTATVERLLKK 265
Query: 391 VQER 402
V E+
Sbjct: 266 VAEK 269
>SPBC3F6.01c |||serine/threonine protein phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 63.7 bits (148), Expect = 2e-11
Identities = 42/129 (32%), Positives = 64/129 (49%)
Frame = +1
Query: 31 EAESYKNKGNDAFKSENYQEAITFYTKAINLAEKGSRDLATYLKNRAAAYLKTKEFEKVI 210
EA KN+ N K + +AI YTKAI L A NR+ A+LK++++ I
Sbjct: 4 EALELKNEANKFLKEGHIVQAIDLYTKAIELDSTN----AILYSNRSLAHLKSEDYGLAI 59
Query: 211 SDCDKALEIIPEDPKALFRRSQAFECLERFEEAYRDAKTIFTVDPTNKAVQPILSRLHTV 390
+D KA+E PE KA FRR+ A + + +EA D + + P++ A + L +
Sbjct: 60 NDASKAIECDPEYAKAYFRRATAHIAIFQPKEAVGDFRKALALAPSDPAARKKLRECEQL 119
Query: 391 VQERARQNA 417
V+ Q A
Sbjct: 120 VKRIRFQEA 128
>SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 56.8 bits (131), Expect = 3e-09
Identities = 37/115 (32%), Positives = 55/115 (47%)
Frame = +1
Query: 19 VVQXEAESYKNKGNDAFKSENYQEAITFYTKAINLAEKGSRDLATYLKNRAAAYLKTKEF 198
V + EAE K +GN+A +++YQ+A+ YTKAI + Y NRAAAY + +F
Sbjct: 78 VNKEEAEKLKLEGNNAIAAKDYQKALDLYTKAIEIDPTS----PVYYSNRAAAYNQLGQF 133
Query: 199 EKVISDCDKALEIIPEDPKALFRRSQAFECLERFEEAYRDAKTIFTVDPTNKAVQ 363
E + D L + P +A R +A L A K DP N+ ++
Sbjct: 134 ENAVEDALTCLSLDPHHARAFGRLGRAKLSLGDAAAAADAYKKGLDFDPNNEVLK 188
>SPAC2F3.02 |||ER protein translocation subcomplex
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 192
Score = 52.4 bits (120), Expect = 5e-08
Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 9/107 (8%)
Frame = +1
Query: 16 MVVQXEAESYKNKGNDAFKSENYQEAITFYTKAINLAEK---------GSRDLATYLKNR 168
M + + K N+AFK + Y+EA Y A+ LA + + L NR
Sbjct: 56 MALSTQVNKMKQTANEAFKRKKYEEAKKLYGLALQLALNRCTWEPSILTREEASVMLCNR 115
Query: 169 AAAYLKTKEFEKVISDCDKALEIIPEDPKALFRRSQAFECLERFEEA 309
AAA + +F + ++D + AL+I K +R+++A E + R EEA
Sbjct: 116 AAAEIALSQFPEALADANAALKIRNNYGKCYYRKAKALEAMHRIEEA 162
>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
spliced|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 47.6 bits (108), Expect = 2e-06
Identities = 27/71 (38%), Positives = 37/71 (52%)
Frame = +1
Query: 178 YLKTKEFEKVISDCDKALEIIPEDPKALFRRSQAFECLERFEEAYRDAKTIFTVDPTNKA 357
+L+ K + KV+ DC AL I P D K ++RR A+ L A RD + +DP N
Sbjct: 51 HLRKKSYTKVVHDCTYALVINPYDKKVIWRRGLAYLRLGHPHLANRDWEHSLELDPNNTY 110
Query: 358 VQPILSRLHTV 390
+Q L RL V
Sbjct: 111 IQKSLHRLKEV 121
>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 697
Score = 38.7 bits (86), Expect = 7e-04
Identities = 18/77 (23%), Positives = 38/77 (49%)
Frame = +1
Query: 19 VVQXEAESYKNKGNDAFKSENYQEAITFYTKAINLAEKGSRDLATYLKNRAAAYLKTKEF 198
+V E ++ GN+ F+ ++ +AI +T +++ L NR+ Y K +
Sbjct: 407 MVSALVEEQQSTGNELFRKGDFSQAIEEFTNSLSQLPAKHTKRVPLLSNRSLCYQKVGDL 466
Query: 199 EKVISDCDKALEIIPED 249
+ + D D+ ++II E+
Sbjct: 467 KTCLQDVDELVDIIGEE 483
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 29.9 bits (64), Expect = 0.33
Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 2/110 (1%)
Frame = +1
Query: 181 LKTKEFEKV--ISDCDKALEIIPEDPKALFRRSQAFECLERFEEAYRDAKTIFTVDPTNK 354
LK + E++ +S ++ +EI+ E+ L + L RFEE YRD + T++ N+
Sbjct: 249 LKAAQEERIEKLSSNNRNVEILKEEKNDLESK------LYRFEE-YRDK--VATLELENE 299
Query: 355 AVQPILSRLHTVVQERARQNAQTSNKVEQMFKLAFGLGEDIEKREKAMAN 504
+Q L+ +++ SNK+ + LGE + E ++N
Sbjct: 300 KIQTELNSWKSLITNELPTPEAVSNKLVFLQNTNANLGERVSSLESQLSN 349
>SPBC577.15c |||NASP family histone binding
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 29.5 bits (63), Expect = 0.43
Identities = 24/111 (21%), Positives = 54/111 (48%), Gaps = 3/111 (2%)
Frame = +1
Query: 37 ESYKNKGNDAFKSENYQEAITFYTKAINLAEKGSRDLATYLKNRAAAYLKTKEFEKVISD 216
E +GN A+ +NY+EA+ Y +A+ +E S + L+NR +L K ++ +
Sbjct: 33 EQLVTQGNMAYAQKNYEEAVDKYGQALMQSE--SIHGSESLENRNVLWLYGKSLFQIAIE 90
Query: 217 CDKALEIIPEDPKALFRRSQAF---ECLERFEEAYRDAKTIFTVDPTNKAV 360
+ L +++ + +++F E + F + + + +TV+ N ++
Sbjct: 91 NSQVLGNALGAKESVSQATESFEEPEAIGSFTFSGQKIENKYTVNEENSSI 141
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 28.7 bits (61), Expect = 0.76
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Frame = +1
Query: 127 EKGSRDLATYLKN----RAAAYLKTKEFEKVISDCDKALEIIPEDPKALFRRSQAFECLE 294
E S++LA L++ + +A K++EK+ SD D+ + + ED + RS EC
Sbjct: 1027 ESSSKELAKQLEDAVREKDSALSFKKDYEKIRSDADRVITSLKEDIEK--ERSLMKECHS 1084
Query: 295 RFE 303
+E
Sbjct: 1085 NYE 1087
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/37 (35%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Frame = +2
Query: 329 YLLWTQLTKLSNLFYHVYTL--*YKSELAKMLKQAIK 433
YL+ T ++ N+F H++TL +K+ L KM K++++
Sbjct: 20 YLVTTLISLKENVFLHIFTLTFLFKAFLLKMAKRSVE 56
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1389
Score = 27.5 bits (58), Expect = 1.8
Identities = 18/67 (26%), Positives = 28/67 (41%)
Frame = +1
Query: 181 LKTKEFEKVISDCDKALEIIPEDPKALFRRSQAFECLERFEEAYRDAKTIFTVDPTNKAV 360
L K F K I AL I P+D A +A+ R+ A + +DP + V
Sbjct: 661 LNAKNFHKAIVHFQSALRISPKDTNAWSGLGEAYARSGRYVSALKAFNRASILDPDDWYV 720
Query: 361 QPILSRL 381
+ ++ L
Sbjct: 721 KYFIATL 727
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 220 DKALEIIPEDPKALFRRSQAFECL-ERFEEAYRDAKTI 330
D +E+ P++ + L RRS+AFE L F + D ++
Sbjct: 407 DSTVEVNPDEKEGLERRSRAFELLINAFVQLQHDVNSL 444
>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 495
Score = 27.5 bits (58), Expect = 1.8
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = -2
Query: 563 TTPFFNITSAPLFSFAKTNRLAMAFSRFSISSPNPKANLN 444
+TP F+ S+PL S + N L++ S ++SSP KAN N
Sbjct: 376 STPVFSTDSSPLSSRTRENLLSLIPS--AVSSPT-KANTN 412
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = -3
Query: 460 QKPT*TFVPLYCLFEHFG 407
Q P TFVPL CL EH G
Sbjct: 504 QNPRATFVPLLCLPEHGG 521
>SPBC582.07c |rpn7||19S proteasome regulatory subunit
Rpn7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 409
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +1
Query: 85 QEAITFYTKAINLAEK--GSRDLATYLKNRAAAYLKTKEFEKVISDCDKALE 234
+E + + KAI A++ G ++ +KN+A Y + E+ + CD+ E
Sbjct: 89 EEKLAEFDKAIEDAQELNGEHEILEAMKNKADYYTNICDRERGVQLCDETFE 140
>SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit
Ssr3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 425
Score = 26.6 bits (56), Expect = 3.1
Identities = 20/89 (22%), Positives = 37/89 (41%)
Frame = +1
Query: 103 YTKAINLAEKGSRDLATYLKNRAAAYLKTKEFEKVISDCDKALEIIPEDPKALFRRSQAF 282
+ + + E D+ +YL + EK + +CDKAL + E + F R
Sbjct: 212 FANILGIREGTRPDIVSYLWQYIKFHRLQDMEEKRLINCDKALRDLFEADRLYFPRIP-- 269
Query: 283 ECLERFEEAYRDAKTIFTVDPTNKAVQPI 369
E + RF E +T++ + V+ +
Sbjct: 270 ELMNRFLEPIDPIVIPYTINVSEHTVEKV 298
>SPBC418.02 |||NatA N-acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/62 (22%), Positives = 31/62 (50%)
Frame = +1
Query: 175 AYLKTKEFEKVISDCDKALEIIPEDPKALFRRSQAFECLERFEEAYRDAKTIFTVDPTNK 354
A+ K ++E+ + A++ P P+ +++ F C+ EEA K +D +++
Sbjct: 374 AHYKLGDYEESNYWLNLAIDHTPTYPELFLAKAKIFLCMGEIEEALCSFKRSVELDKSDR 433
Query: 355 AV 360
A+
Sbjct: 434 AL 435
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 26.2 bits (55), Expect = 4.0
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Frame = +1
Query: 34 AESYKNKGNDAFKSENYQEAITFYTKAINLAEKGSRDLATY-LKNRAAAYLKTKEFEKVI 210
AES K KSE E + + + + E+ DLA Y K+ L+ + +
Sbjct: 173 AESNKIMDETIQKSEKIDELLQYIEERLRELEEEKNDLAVYHKKDNERRCLEYAIYSREH 232
Query: 211 SDCDKALEIIPEDPKALFRRS 273
+ + L+ + +D A R+
Sbjct: 233 DEINSVLDALEQDRIAALERN 253
>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 618
Score = 26.2 bits (55), Expect = 4.0
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = -3
Query: 322 WHLCRLLQISPNIQKLAISGTRLSDLLVLFLELYHSH*SLFRILWSLSRLR 170
+ L RLL P++ K A S ++ +L H+ L+ ILW R R
Sbjct: 536 YDLVRLLGQYPDVLKNAFRFQETSTVVTYLFKLTHAVSKLYDILWVRGRER 586
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 25.8 bits (54), Expect = 5.3
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = -2
Query: 506 RLAMAFSRFSISSPNPKANLNICSTLL--LV*AFWRAR 399
RL MAF+ SPN ++ IC+ L L AF +AR
Sbjct: 362 RLEMAFTVQEYHSPNGQSRTGICTGFLEDLALAFLKAR 399
>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
ligase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 788
Score = 25.8 bits (54), Expect = 5.3
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 511 VLAKENSGAEVMLKNGVVQRIQQLLK 588
+L ENSG V N VQRI+ L+K
Sbjct: 436 ILTYENSGVSVDNGNEFVQRIKDLVK 461
>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1029
Score = 25.4 bits (53), Expect = 7.1
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +1
Query: 136 SRDLATYLKNRAAAYLKTKEFEK--VISDCDKALEIIPEDPKALFRRS 273
S++++ + A YLK + I D L+I PE+ KALFR++
Sbjct: 44 SQEISLPTQQAAVIYLKNRVSRSWSSIDDAPSPLDI-PEEQKALFRQN 90
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 25.0 bits (52), Expect = 9.3
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 187 SLSRLRPDFLNMLQGLGCLFRPNLS 113
S S + P L+++Q L CL PN++
Sbjct: 566 SCSTMFPQTLSLMQLLDCLLNPNMT 590
>SPBC365.13c |hba1|caf1|Ran GTPase binding protein
Hba1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 399
Score = 25.0 bits (52), Expect = 9.3
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 22 VQXEAESYKNKGNDAFKSENYQEAITFYTKAINLAEKGS 138
V+ E+ S K K ND SEN+ E + + +KGS
Sbjct: 199 VETESGSGKEKENDKKSSENFDELLANTSAKAFENQKGS 237
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,463,409
Number of Sequences: 5004
Number of extensions: 48809
Number of successful extensions: 186
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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