Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_O16
         (489 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    26   0.25 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   5.3  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.3  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.8 bits (54), Expect = 0.25
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 222 FCEFCRRVVRKLRWRQPSNARATDSGGKIYMGTERPXLRT 103
           FC+  +R + K++WR+P  A   +     Y+  E   LRT
Sbjct: 24  FCQPTQRTMSKIQWRKPKPAMVEEKTQLRYL-EELNALRT 62


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 137 ILPPESVALALLG 175
           I+PP S+A+ LLG
Sbjct: 301 IIPPTSLAIPLLG 313


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 13  KFFSCFQSFLHFLXPSRCRP 72
           +FFS  Q  +    PS CRP
Sbjct: 505 RFFSFHQWGILVYEPSACRP 524


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,882
Number of Sequences: 438
Number of extensions: 1945
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)