Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_O13
         (789 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    24   1.4  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    24   1.4  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    24   1.9  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    24   1.9  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    24   1.9  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    24   1.9  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    24   1.9  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    24   1.9  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    24   1.9  
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              23   2.4  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   4.3  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   9.9  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   9.9  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   9.9  

>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 206 PKLACY*YCLLKA 168
           P + CY YCLL+A
Sbjct: 68  PSITCYMYCLLEA 80


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 206 PKLACY*YCLLKA 168
           P + CY YCLL+A
Sbjct: 68  PSITCYMYCLLEA 80


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 452 EYSKFKFGNLETDADKKGDKTSTERCLQRHLV 547
           EY K++    ET  ++  D+T  ERC +  ++
Sbjct: 55  EYQKYR----ETSKERSRDRTERERCKEPKII 82


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 452 EYSKFKFGNLETDADKKGDKTSTERCLQRHLV 547
           EY K++    ET  ++  D+T  ERC +  ++
Sbjct: 55  EYQKYR----ETSKERSRDRTERERCKEPKII 82


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 452 EYSKFKFGNLETDADKKGDKTSTERCLQRHLV 547
           EY K++    ET  ++  D+T  ERC +  ++
Sbjct: 55  EYQKYR----ETSKERSRDRTERERCKEPKII 82


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 452 EYSKFKFGNLETDADKKGDKTSTERCLQRHLV 547
           EY K++    ET  ++  D+T  ERC +  ++
Sbjct: 55  EYQKYR----ETSKERSRDRTERERCKEPKII 82


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 452 EYSKFKFGNLETDADKKGDKTSTERCLQRHLV 547
           EY K++    ET  ++  D+T  ERC +  ++
Sbjct: 55  EYQKYR----ETSKERSRDRTERERCKEPKII 82


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 452 EYSKFKFGNLETDADKKGDKTSTERCLQRHLV 547
           EY K++    ET  ++  D+T  ERC +  ++
Sbjct: 55  EYQKYR----ETSKERSRDRTERERCKEPKII 82


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 452 EYSKFKFGNLETDADKKGDKTSTERCLQRHLV 547
           EY K++    ET  ++  D+T  ERC +  ++
Sbjct: 55  EYQKYR----ETSKERSRDRTERERCKEPKII 82


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 203 KLACY*YCLLKACGXKLDADAXMAXPTF**RVXRRD 96
           KLACY  C+LK  G  ++AD       F  R  + D
Sbjct: 58  KLACYVDCMLKKVGF-VNADTTFNEEKFRERTTKLD 92


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 218 GICIERLPVVTPP 256
           GI +ER P++TPP
Sbjct: 426 GIRVERDPILTPP 438


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 34  LVFNQFSFSSILFPVMHS 87
           L+FNQF   S  F ++H+
Sbjct: 184 LIFNQFQDFSESFQILHA 201


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 34  LVFNQFSFSSILFPVMHS 87
           L+FNQF   S  F ++H+
Sbjct: 184 LIFNQFQDFSESFQILHA 201


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 34  LVFNQFSFSSILFPVMHS 87
           L+FNQF   S  F ++H+
Sbjct: 184 LIFNQFQDFSESFQILHA 201


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,784
Number of Sequences: 438
Number of extensions: 3570
Number of successful extensions: 19
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)