Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_O12
         (553 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce...    91   8e-20
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    28   0.80 
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    27   1.4  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    27   1.8  
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ...    27   2.4  
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    25   5.6  

>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 134

 Score = 91.5 bits (217), Expect = 8e-20
 Identities = 48/123 (39%), Positives = 67/123 (54%), Gaps = 1/123 (0%)
 Frame = +3

Query: 6   GRVALVADGPLKGNLVSVVXVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFRLKYAFTAP 185
           GRV LV  G   G L  +V ++D  RAL+D P S  PRQ IR   + LT   +K    A 
Sbjct: 11  GRVVLVTKGEYTGKLAVIVDIVDHKRALIDSPCSEFPRQVIRYGSVVLTHIVMKLPRGAR 70

Query: 186 TRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFK-LTAARVKRNRARTAVFK 362
           + +V K W    +  KW  S WA+KL  K+ R+Q+ D+DRF  +   + +R +   AV K
Sbjct: 71  SGIVAKKWKAQDVCNKWASSAWAKKLEAKKVRSQLNDFDRFAVMRLKKQRREQVNVAVAK 130

Query: 363 SLK 371
           +LK
Sbjct: 131 ALK 133


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 28.3 bits (60), Expect = 0.80
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 299 VICHLCALFFVR*LLGPLTFCPFFIEFSICPRF 201
           V+C  CAL  +R    P+ FCP  ++F+  P+F
Sbjct: 508 VVCRTCALSRMRGR--PVGFCPLQLDFNNWPKF 538


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 16/49 (32%), Positives = 20/49 (40%)
 Frame = -3

Query: 437 HFFRSRFRDIFLAEGTSTRSLHLQALEYGSPGTVPLNSCSC*LEPIVIC 291
           HF    F+  +   G +  S H   LE+GS     LN  S     I IC
Sbjct: 442 HFLTGNFKCAYSYLGFAIHSAHTLGLEHGSTDNSTLNEVSTEETSIRIC 490


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 18/68 (26%), Positives = 36/68 (52%)
 Frame = +3

Query: 186 TRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKS 365
           + L  +A  + +  E+  E++  +KLA +EKR +  +    K    R+++ RA+ A  K 
Sbjct: 703 SELSERAAQERERKEQAKEAKRLKKLAKEEKRLKKKEEKARKAEEKRLQKERAKYA--KQ 760

Query: 366 LKVKAARA 389
           +  ++A A
Sbjct: 761 MSRESAHA 768


>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
           Str2 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 12/51 (23%), Positives = 25/51 (49%)
 Frame = -1

Query: 475 YFLAGFLVAFLVRTFFAAALGIFFLPKVPARAAFTFKLLNTAVLARFLLTR 323
           YF++ ++ +  + +F   + G+           F F +  TA+L+ FL+ R
Sbjct: 362 YFMSYYIFSNFLTSFLQVSYGLSIDMSSLTLNVFVFSMTTTAILSGFLMKR 412


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 88  WLMDPAVEYLGNRSA*TNSISQNSASNTRSQPLLVS 195
           ++ D AV Y  N+    NS++ ++A N  S PL+ +
Sbjct: 132 YMPDSAVAYNPNQDQFGNSVNVSAACNNVSAPLIAN 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,084,055
Number of Sequences: 5004
Number of extensions: 40002
Number of successful extensions: 95
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)