Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_O05
         (333 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0113 - 12647599-12648052,12648078-12648319                       27   2.8  
06_02_0061 - 11043183-11043417,11043556-11043796,11043923-110441...    27   3.7  
02_01_0221 + 1447305-1447435,1448693-1449140                           27   4.9  

>01_03_0113 - 12647599-12648052,12648078-12648319
          Length = 231

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 100 PQLXLRKSLLQPSSKPVLFCR*TPGNHSKD 189
           P L LR+S L+ S+ PV+ C   P  HS D
Sbjct: 71  PPLALRRSQLRGSAAPVVNCICVPLKHSFD 100


>06_02_0061 -
           11043183-11043417,11043556-11043796,11043923-11044106,
           11044228-11044437,11045135-11045423,11045787-11045923,
           11046019-11046137,11046405-11046518,11046710-11046803
          Length = 540

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -1

Query: 99  ERSAXRNATDE--KLKHHRCTMKALKRHK 19
           + +  RNAT    + KHH  TMKAL+R K
Sbjct: 280 QNNEVRNATSPLGEKKHHHKTMKALQRSK 308


>02_01_0221 + 1447305-1447435,1448693-1449140
          Length = 192

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -1

Query: 150 NGLRRWLEQRLPQXQLRER-SAXRNATDEKLKHHRCTMKALKRHKLT 13
           N + RWL++  P  Q+R       N + E+ +H   T K+    K T
Sbjct: 73  NMILRWLDRMKPSAQIRPHPPGPPNGSSEQFRHLSSTSKSTGAQKPT 119


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,516,853
Number of Sequences: 37544
Number of extensions: 73603
Number of successful extensions: 202
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)