Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_O05
         (333 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77665-9|CAB01223.2|  729|Caenorhabditis elegans Hypothetical pr...    27   4.3  
U40941-6|AAA81711.2|  435|Caenorhabditis elegans Jnk kinase prot...    27   4.3  
AB024086-1|BAA82641.1|  435|Caenorhabditis elegans JKK-1 protein.      27   4.3  

>Z77665-9|CAB01223.2|  729|Caenorhabditis elegans Hypothetical
           protein K02E11.1 protein.
          Length = 729

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = -1

Query: 240 IYLFICVNFFKMYTFYIILAVITRRLSAKENGLRRWLEQRL 118
           +  FI +NF K   FY    ++     + E G+  W   +L
Sbjct: 507 VVCFILLNFLKRLAFYKKFGILRTSSQSDEEGISSWESVKL 547


>U40941-6|AAA81711.2|  435|Caenorhabditis elegans Jnk kinase protein
           1 protein.
          Length = 435

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -1

Query: 171 RRLSAKENGLRRWLEQRLPQXQLRERSAXRNATDEKLKHHRCT 43
           +RL   E  +R+W   +L   ++R R   R +T    KH  C+
Sbjct: 8   QRLRDLETRVRKWKFLKLGLTEVRLRPRDRRSTSVDQKHKECS 50


>AB024086-1|BAA82641.1|  435|Caenorhabditis elegans JKK-1 protein.
          Length = 435

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -1

Query: 171 RRLSAKENGLRRWLEQRLPQXQLRERSAXRNATDEKLKHHRCT 43
           +RL   E  +R+W   +L   ++R R   R +T    KH  C+
Sbjct: 8   QRLRDLETRVRKWKFLKLGLTEVRLRPRDRRSTSVDQKHKECS 50


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,780,971
Number of Sequences: 27780
Number of extensions: 66880
Number of successful extensions: 306
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 306
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)