Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_O05
         (333 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   3.9  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    20   6.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       20   6.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              20   9.1  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -1

Query: 168 RLSAKENGLRRWLEQRLPQXQLRERSAXRNAT 73
           RLS     + +W E  +P  Q  ER   R AT
Sbjct: 221 RLSRLVRYVSQWEEVYIPLYQQPERHYERRAT 252


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
            protein.
          Length = 1010

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 15   SVYAASVPSLYIGGASVSHQSR 80
            S+ A SVP++++    V HQ +
Sbjct: 982  SLGALSVPNIFVKDVLVFHQGQ 1003


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 9/38 (23%), Positives = 16/38 (42%)
 Frame = -1

Query: 150 NGLRRWLEQRLPQXQLRERSAXRNATDEKLKHHRCTMK 37
           N +  W +      + R  +  +NA    L  H+C M+
Sbjct: 528 NEIYNWFQNTFCYFR-RNAATWKNAVRHNLSLHKCFMR 564


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 175 NHSKDYIECIHF 210
           NHSK+Y+  I F
Sbjct: 231 NHSKEYLVSIMF 242


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,338
Number of Sequences: 438
Number of extensions: 785
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7466580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)