Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_O03
(632 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0079 - 20732041-20732097,20732219-20732301,20732661-207328... 246 2e-65
01_01_0322 - 2589074-2589121,2589214-2589296,2589414-2589492,258... 244 3e-65
01_06_1301 + 36122797-36122838,36122958-36123033,36123145-361232... 231 3e-61
02_03_0230 + 16620856-16620991,16622157-16622239,16632090-166321... 31 0.76
04_04_0148 - 23114000-23114113,23114215-23114350,23114813-231149... 29 4.1
08_02_0546 - 18474217-18475133,18475207-18475396,18475870-184763... 28 7.1
01_06_1409 - 37111954-37112061,37112295-37112330,37112434-371124... 28 7.1
01_05_0154 + 18667338-18670110,18670233-18670561,18670914-186709... 28 7.1
09_04_0620 - 19011828-19011896,19012015-19012387,19013158-19013486 27 9.4
08_02_0536 - 18302394-18302826,18302903-18303183,18303480-183037... 27 9.4
>09_06_0079 -
20732041-20732097,20732219-20732301,20732661-20732834,
20732927-20733059,20733226-20733310,20733527-20733650,
20733835-20733904,20734643-20734669,20734788-20734949
Length = 304
Score = 246 bits (601), Expect = 2e-65
Identities = 112/207 (54%), Positives = 148/207 (71%)
Frame = +3
Query: 3 GXKNQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYVKTIIPDNVEVAAQNCWKSPKGAFT 182
G K+ ++++V L L+P+V+V+V P IY+ VK + D +EV+AQN W GA+T
Sbjct: 65 GTKDSVSKLVTELNAATLEPDVDVVVAPPFIYIDQVKNSLTDRIEVSAQNVWIGKGGAYT 124
Query: 183 GEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGLKVIACIGETLEERE 362
GEIS + D+G WVILGHSERR + GE D+ + +K A+AL +KVIACIGE LEERE
Sbjct: 125 GEISAEQLVDIGCQWVILGHSERRHVIGEDDQFIGKKAAYALSQNVKVIACIGELLEERE 184
Query: 363 SGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAIGTGKTATPQQAQDVHHALRNWLSA 542
+GKT +V F+Q+KA +I W ++V+AYEPVWAIGTGK ATP+QAQ+VH A+R+WL
Sbjct: 185 AGKTFDVCFKQMKAFADSI-TNWADVVIAYEPVWAIGTGKVATPEQAQEVHAAVRDWLKT 243
Query: 543 NVSGSVSDAVRIQYGGSVTAANAXELA 623
NVS V+ +RI YGGSV AAN ELA
Sbjct: 244 NVSPEVASGIRIIYGGSVNAANCAELA 270
>01_01_0322 -
2589074-2589121,2589214-2589296,2589414-2589492,
2589622-2589716,2590198-2590330,2590601-2590685,
2591040-2591163,2591297-2591372,2594305-2594319
Length = 245
Score = 244 bits (598), Expect = 3e-65
Identities = 117/210 (55%), Positives = 152/210 (72%), Gaps = 2/210 (0%)
Frame = +3
Query: 3 GXKNQINEIVNNLKKGPLDPN--VEVIVGVPAIYLSYVKTIIPDNVEVAAQNCWKSPKGA 176
G +Q+++IV L +G + VEV+V P ++L VK+ + ++VAAQNCW GA
Sbjct: 7 GTTDQVDKIVKILNEGQIASTDVVEVVVSPPYVFLPVVKSQLRPEIQVAAQNCWVKKGGA 66
Query: 177 FTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGLKVIACIGETLEE 356
FTGE+S M+ ++ + WVILGHSERR++ GE +E V +KVA+AL GLKVIAC+GETLE+
Sbjct: 67 FTGEVSAEMLVNLSIPWVILGHSERRSLLGESNEFVGDKVAYALSQGLKVIACVGETLEQ 126
Query: 357 RESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAIGTGKTATPQQAQDVHHALRNWL 536
RESG T +VV Q KA+ I D W N+V+AYEPVWAIGTGK ATP QAQ+VH LR WL
Sbjct: 127 RESGSTMDVVAAQTKAISERIKD-WTNVVVAYEPVWAIGTGKVATPDQAQEVHDGLRKWL 185
Query: 537 SANVSGSVSDAVRIQYGGSVTAANAXELAS 626
+ANVS V+++ RI YGGSVT AN ELA+
Sbjct: 186 AANVSAEVAESTRIIYGGSVTGANCKELAA 215
>01_06_1301 +
36122797-36122838,36122958-36123033,36123145-36123268,
36123675-36123759,36124076-36124208,36124712-36124806,
36124982-36125060,36125205-36125287,36125505-36125555
Length = 255
Score = 231 bits (566), Expect = 3e-61
Identities = 115/210 (54%), Positives = 144/210 (68%), Gaps = 2/210 (0%)
Frame = +3
Query: 3 GXKNQINEIVNNLKKG--PLDPNVEVIVGVPAIYLSYVKTIIPDNVEVAAQNCWKSPKGA 176
G + +IV L + P + VEV+V P ++L VK ++ + VAAQNCW GA
Sbjct: 16 GTGEDVKKIVTVLNEAEVPSEDVVEVVVSPPFVFLPQVKGLLRPDFSVAAQNCWVRKGGA 75
Query: 177 FTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGLKVIACIGETLEE 356
FTGEIS M+ ++ V WVILGHSERR + GE + VA+K+A+AL G+KVIACIGETLE+
Sbjct: 76 FTGEISAEMLVNLQVPWVILGHSERRALMGESSDFVADKIAYALSQGIKVIACIGETLEQ 135
Query: 357 RESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAIGTGKTATPQQAQDVHHALRNWL 536
RE+G T EVV Q KA+ I D W N+VLAYEPVWAIGTGK ATP QAQ+VH LR WL
Sbjct: 136 REAGTTMEVVAAQTKAIAEKISD-WTNVVLAYEPVWAIGTGKVATPAQAQEVHDGLRKWL 194
Query: 537 SANVSGSVSDAVRIQYGGSVTAANAXELAS 626
NVS +V+++ RI Y GSV AN ELA+
Sbjct: 195 VTNVSPAVAESTRIIYRGSVNGANCKELAA 224
>02_03_0230 +
16620856-16620991,16622157-16622239,16632090-16632149,
16632795-16632903,16633285-16633337,16633503-16633559,
16633730-16633846
Length = 204
Score = 31.1 bits (67), Expect = 0.76
Identities = 22/64 (34%), Positives = 34/64 (53%)
Frame = +3
Query: 261 FGEKDELVAEKVAHALESGLKVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENI 440
F E+ EL VA ES L + +T EE ++ K ++ F + +ALV+A +N+
Sbjct: 142 FIERAELKQMMVATLAESDLNLT---DQTFEEADTNKDGKIDFEEWQALVNAHPCLLKNM 198
Query: 441 VLAY 452
LAY
Sbjct: 199 TLAY 202
>04_04_0148 -
23114000-23114113,23114215-23114350,23114813-23114912,
23115003-23115113,23115197-23115234,23115359-23115429,
23116998-23117176,23117272-23117389
Length = 288
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -1
Query: 149 LGCNFDIIRNDSLHIRQVNSRNTNNYL 69
LG NF++ RND L I V +N L
Sbjct: 104 LGLNFEVYRNDELTIEDVKRKNPRGIL 130
>08_02_0546 -
18474217-18475133,18475207-18475396,18475870-18476313,
18476629-18477495,18478858-18479367
Length = 975
Score = 27.9 bits (59), Expect = 7.1
Identities = 20/76 (26%), Positives = 30/76 (39%)
Frame = +3
Query: 234 LGHSERRTIFGEKDELVAEKVAHALESGLKVIACIGETLEERESGKTEEVVFRQLKALVS 413
+ H R E D +V K+ + S L+ + +EE +S ++ L L
Sbjct: 425 ISHEYHRKRKQETDVVVHSKIETYIRSSLRT--AFAQKMEEADSKRSSRHPVPVLSILAK 482
Query: 414 AIGDKWENIVLAYEPV 461
AIGD Y PV
Sbjct: 483 AIGDLATKEKTVYSPV 498
>01_06_1409 -
37111954-37112061,37112295-37112330,37112434-37112498,
37112610-37112688,37112967-37113041,37113623-37114147
Length = 295
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = -3
Query: 387 KQLPQSCQILSLRESHQYRQ*LSSQIQGHEQPFQQQVHLFHQKLFFFQNDQ 235
++LPQ + ++ Q +Q L Q Q +Q QQQ QKL Q Q
Sbjct: 44 QKLPQHQHLQQQQQQQQQQQKLQQQQQQQQQKLQQQQQQQQQKLQQQQQQQ 94
>01_05_0154 +
18667338-18670110,18670233-18670561,18670914-18670939,
18671678-18671783
Length = 1077
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -2
Query: 232 ITQFTPTSLIIAGEISPVKAPFGDFQQFWAATSTLSGMIVFT 107
+T +SL +AG ISPV Q +TLSG + FT
Sbjct: 80 VTSLNLSSLGLAGSISPVIGNLTFLQSLDLFNNTLSGDVYFT 121
>09_04_0620 - 19011828-19011896,19012015-19012387,19013158-19013486
Length = 256
Score = 27.5 bits (58), Expect = 9.4
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Frame = +3
Query: 228 VILGHSERRTIFGEKDELVAEKVAHALESGLKVIAC--IGETLEERESGKTEEVVFRQLK 401
V++G F E++E E + + G A IGE E E G EE V +LK
Sbjct: 30 VLMGKRRNEGFFIEEEEEEEEVLTESSSIGAPSPASSSIGENSGEEEGGDDEEEVESKLK 89
Query: 402 ALVSAIG 422
A +G
Sbjct: 90 AEDEQVG 96
>08_02_0536 -
18302394-18302826,18302903-18303183,18303480-18303747,
18303959-18303996,18304459-18304761
Length = 440
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 246 ERRTIFGEKDELVAEKVAHALESGLKVIACI 338
E+ I GE++ + EK+ A+ G K IA +
Sbjct: 307 EKSVIIGERNRVATEKIQEAINHGYKRIAVL 337
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,386,815
Number of Sequences: 37544
Number of extensions: 359425
Number of successful extensions: 922
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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