Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_O03
         (632 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...   318   3e-89
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.4  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    23   2.5  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    23   2.5  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    23   2.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   5.7  
AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           21   9.9  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   9.9  

>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score =  318 bits (781), Expect = 3e-89
 Identities = 149/210 (70%), Positives = 177/210 (84%)
 Frame = +3

Query: 3   GXKNQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYVKTIIPDNVEVAAQNCWKSPKGAFT 182
           G K++IN+IV  LKKGPLD NVEV+VGVP+IYL+Y K I+P+N+ +A QN +K  KGAFT
Sbjct: 15  GTKSEINDIVGFLKKGPLDSNVEVVVGVPSIYLTYAKNILPNNISIAGQNTYKVAKGAFT 74

Query: 183 GEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGLKVIACIGETLEERE 362
           GEISPAM+ D G+ WVILGHSERR IFGE DEL+AEKVAHALESGLKVIACIGE LEERE
Sbjct: 75  GEISPAMLLDNGIPWVILGHSERRNIFGENDELIAEKVAHALESGLKVIACIGEKLEERE 134

Query: 363 SGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAIGTGKTATPQQAQDVHHALRNWLSA 542
           +GKT+EVVFRQ KA+ + I + W+N+V+AYEPVWAIGTGKTATPQQAQ+VH  LRNW S 
Sbjct: 135 AGKTDEVVFRQTKAIANKI-NSWDNVVVAYEPVWAIGTGKTATPQQAQEVHEKLRNWFSK 193

Query: 543 NVSGSVSDAVRIQYGGSVTAANAXELASCK 632
           NV+ +V++ VRI YGGSVTA NA +LA  K
Sbjct: 194 NVNQTVAETVRIIYGGSVTAGNAKDLAKEK 223


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 354 LRESHQYRQ*LSSQIQGHEQPFQQQ 280
           L+  H + Q  S+ +Q H +P+QQQ
Sbjct: 144 LQNHHHHLQ--STAVQDHHRPYQQQ 166


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +3

Query: 369 KTEEVVFRQLKALVSAIGDKWENIVLAYEP 458
           K  EV+ + +K LV    + W+++   Y+P
Sbjct: 82  KQREVIKKVIKFLVENKPELWDSLANKYDP 111


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +3

Query: 369 KTEEVVFRQLKALVSAIGDKWENIVLAYEP 458
           K  EV+ + +K LV    + W+++   Y+P
Sbjct: 82  KQREVIKKVIKFLVENKPELWDSLANKYDP 111


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +3

Query: 369 KTEEVVFRQLKALVSAIGDKWENIVLAYEP 458
           K  EV+ + +K LV    + W+++   Y+P
Sbjct: 82  KQREVIKKVIKFLVENKPELWDSLANKYDP 111


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 6/26 (23%), Positives = 15/26 (57%)
 Frame = +3

Query: 75  IVGVPAIYLSYVKTIIPDNVEVAAQN 152
           ++G P+  + Y   +IP+   ++ +N
Sbjct: 848 VIGTPSTGMMYKPFLIPEQTSISHEN 873


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = -3

Query: 384 QLPQSCQILSLRESHQYRQ*LSSQIQGHEQPFQQQ 280
           ++ +  Q +  ++ HQ +Q  +  +   +QP QQQ
Sbjct: 410 KMTEQQQQMQAQQQHQQQQQQTQHVINAQQPQQQQ 444


>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -2

Query: 397 NCLKTTSSVLPDSLSSRVSPIQA 329
           +C+KTT +V+       + P QA
Sbjct: 88  HCMKTTQAVVVSLYEDPIQPQQA 110


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 12/42 (28%), Positives = 17/42 (40%)
 Frame = -2

Query: 439 IFSHLSPMADTKAFNCLKTTSSVLPDSLSSRVSPIQAMTFKP 314
           IF H S           +TTS  L D +  +V     + F+P
Sbjct: 171 IFIHSSDTDGRALLGRFQTTSQNLEDDVEIKVQVESVIEFEP 212


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,219
Number of Sequences: 438
Number of extensions: 3821
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)