Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_N23
         (778 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...   101   1e-23
DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              23   2.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   2.4  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   2.4  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    23   2.4  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   7.3  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   9.7  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   9.7  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score =  101 bits (241), Expect = 1e-23
 Identities = 65/193 (33%), Positives = 96/193 (49%), Gaps = 3/193 (1%)
 Frame = +2

Query: 173 CSCXNVCSYPKCECLKRSGGNNYVVEHGELPKLKIDSKEKQNLILECNKQCTCSYQCGNR 352
           C C    S  KC   +  G   Y ++H    K+++        I ECNK+C C   C NR
Sbjct: 435 CECKTCNSKTKCCFAQDDGLCPYTLKH----KIRVPPGTP---IYECNKRCNCDIDCINR 487

Query: 353 LVQLGPLKGLMIKKCDIVQKGFGLFTNVFVRNGSFICEYIGELLTKDQAFKRYHHNKTNK 532
           +VQ G      I +     +G+G+ T   ++ GSF+ +Y+GE++T ++A KR        
Sbjct: 488 VVQRGTKMQFCIFRT-ANGRGWGVKTMKTIKKGSFVTQYVGEVITNEEAEKRGKEYDA-A 545

Query: 533 EMNYIFCLIEHCGTEVIETFYDPSKFGNIGRYINHSCEPNSQILPV---RYDMPIPKLAI 703
              Y+F L  +   E      D + +GNI  +INHSC+PN  +  V     D  +PKLA+
Sbjct: 546 GRTYLFDLDYNESEEQCPYTVDAAIYGNISHFINHSCDPNLAVYGVWINCLDPNLPKLAL 605

Query: 704 FACEDIKPGSEIT 742
           FA +DIK   EIT
Sbjct: 606 FATKDIKQNEEIT 618


>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 227 GGNNYVVEHGELPKLKIDSKEKQNLILECN 316
           GGN   V   E+ ++ +D  E   LI EC+
Sbjct: 76  GGNFNEVVVREIAEIYLDENEVNKLITECS 105


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +2

Query: 482 LTKDQAFKRYHHNKTNKE-MNYIFCLIEHCGTEVIETF 592
           +TKDQ ++ + HN   KE      C +E     +  TF
Sbjct: 103 VTKDQPYRPHPHNLVGKEACKQGVCTVEVSSENMTVTF 140


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +2

Query: 482 LTKDQAFKRYHHNKTNKE-MNYIFCLIEHCGTEVIETF 592
           +TKDQ ++ + HN   KE      C +E     +  TF
Sbjct: 103 VTKDQPYRPHPHNLVGKEACKQGVCTVEVSSENMTVTF 140


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
 Frame = +2

Query: 455 FICEYIGELLTKDQAFKRY---HHNKTNKEMNYIFCLIEHCGTEVIETF---YDPSKFGN 616
           F C+  G++L    + KR+    H +  +E   + C   +C    + T    Y  S+ G+
Sbjct: 6   FTCQLCGKVLCSKASLKRHVADKHAERQEEYRCVICERVYCSRNSLMTHIYTYHKSRPGD 65

Query: 617 I 619
           I
Sbjct: 66  I 66


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +2

Query: 521 KTNKEMNYIFCLIEHC-GTEVIETFYDPSKF 610
           KT K+  Y++ L+E C G E+     D   F
Sbjct: 433 KTFKDRKYLYMLMEACLGGELWTVLRDKGHF 463


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 608 IYLDHRKSL*PQYHNVQLNKICNSSLCLFY 519
           I L+H +    + HNV +N I  +S C  +
Sbjct: 262 IQLEHFEMKIKRKHNVFVNNILAASACSLF 291


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +3

Query: 66  HNXLFSIXXXLPGPCRQQPGHXNS 137
           HN L +     PGP     GH +S
Sbjct: 401 HNNLLNNVYSTPGPHHHTMGHGHS 424


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,947
Number of Sequences: 438
Number of extensions: 3916
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)