Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_N21
         (714 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    25   0.61 
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    25   0.61 
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    25   0.61 
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    25   0.61 
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    25   0.61 
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           25   0.61 
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    25   0.61 
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       22   5.7  

>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +1

Query: 394 TNSISQNSASNTRSQPLLVL*GKRGQMLNSMKNGQKVNGPRS*RTKRSAHR*QITIGSS 570
           T++ SQN +S   S        K G   N+ K+GQ  N P+     +  H  Q T+ ++
Sbjct: 159 TSTASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKRVHLGQSTVNAN 217


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +1

Query: 394 TNSISQNSASNTRSQPLLVL*GKRGQMLNSMKNGQKVNGPRS*RTKRSAHR*QITIGSS 570
           T++ SQN +S   S        K G   N+ K+GQ  N P+     +  H  Q T+ ++
Sbjct: 159 TSTASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKRVHLGQSTVNAN 217


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +1

Query: 394 TNSISQNSASNTRSQPLLVL*GKRGQMLNSMKNGQKVNGPRS*RTKRSAHR*QITIGSS 570
           T++ SQN +S   S        K G   N+ K+GQ  N P+     +  H  Q T+ ++
Sbjct: 159 TSTASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKRVHLGQSTVNAN 217


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +1

Query: 394 TNSISQNSASNTRSQPLLVL*GKRGQMLNSMKNGQKVNGPRS*RTKRSAHR*QITIGSS 570
           T++ SQN +S   S        K G   N+ K+GQ  N P+     +  H  Q T+ ++
Sbjct: 159 TSTASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKRVHLGQSTVNAN 217


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +1

Query: 394 TNSISQNSASNTRSQPLLVL*GKRGQMLNSMKNGQKVNGPRS*RTKRSAHR*QITIGSS 570
           T++ SQN +S   S        K G   N+ K+GQ  N P+     +  H  Q T+ ++
Sbjct: 115 TSTASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKRVHLGQSTVNAN 173


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +1

Query: 394 TNSISQNSASNTRSQPLLVL*GKRGQMLNSMKNGQKVNGPRS*RTKRSAHR*QITIGSS 570
           T++ SQN +S   S        K G   N+ K+GQ  N P+     +  H  Q T+ ++
Sbjct: 159 TSTASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKRVHLGQSTVNAN 217


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +1

Query: 394 TNSISQNSASNTRSQPLLVL*GKRGQMLNSMKNGQKVNGPRS*RTKRSAHR*QITIGSS 570
           T++ SQN +S   S        K G   N+ K+GQ  N P+     +  H  Q T+ ++
Sbjct: 159 TSTASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKRVHLGQSTVNAN 217


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 389 LKPTPSHKIPPQIRVHSP 442
           ++P P H  PP  ++H P
Sbjct: 28  VQPLPRHFNPPSDKLHHP 45


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,125
Number of Sequences: 336
Number of extensions: 3383
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18947110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)