Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_N21
(714 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce... 105 5e-24
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac... 30 0.38
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch... 29 0.87
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos... 28 1.2
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 27 2.0
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 27 3.5
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p... 26 6.1
SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce... 25 8.1
SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13 |Schizosa... 25 8.1
>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 134
Score = 105 bits (253), Expect = 5e-24
Identities = 55/130 (42%), Positives = 74/130 (56%), Gaps = 1/130 (0%)
Frame = +3
Query: 243 FARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFRL 422
F RYVE GRV LV G GKL +VD++D RAL+D P S PRQ IR + LT +
Sbjct: 4 FKRYVEVGRVVLVTKGEYTGKLAVIVDIVDHKRALIDSPCSEFPRQVIRYGSVVLTHIVM 63
Query: 423 KYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFK-LTAARVKRNR 599
K A + +V K W + KW S WA+KL K+ R+Q+ D+DRF + + +R +
Sbjct: 64 KLPRGARSGIVAKKWKAQDVCNKWASSAWAKKLEAKKVRSQLNDFDRFAVMRLKKQRREQ 123
Query: 600 ARTAVFKSLK 629
AV K+LK
Sbjct: 124 VNVAVAKALK 133
>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 136
Score = 29.9 bits (64), Expect = 0.38
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 249 RYVEPGRVALVADGPLKGKLVSVVDVIDQ 335
+ ++PG+VAL+ G GK V ++ IDQ
Sbjct: 3 KILKPGKVALITRGRFAGKKVVILQAIDQ 31
>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 3|||Manual
Length = 136
Score = 28.7 bits (61), Expect = 0.87
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 249 RYVEPGRVALVADGPLKGKLVSVVDVIDQ 335
+ ++PG+VALV G GK V ++ +DQ
Sbjct: 3 KILKPGKVALVTRGRFAGKKVVILQNVDQ 31
>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 640
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -2
Query: 557 VICHLCALLFVR*LLGPLTFCPFFIEFSICPRF 459
V+C CAL +R P+ FCP ++F+ P+F
Sbjct: 508 VVCRTCALSRMRGR--PVGFCPLQLDFNNWPKF 538
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 27.5 bits (58), Expect = 2.0
Identities = 16/49 (32%), Positives = 20/49 (40%)
Frame = -2
Query: 695 HFFRSRFRDIFLAEGTSTRSXHLQALEYGSPGTVPLNSCSC*LEPIVIC 549
HF F+ + G + S H LE+GS LN S I IC
Sbjct: 442 HFLTGNFKCAYSYLGFAIHSAHTLGLEHGSTDNSTLNEVSTEETSIRIC 490
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/56 (26%), Positives = 30/56 (53%)
Frame = +3
Query: 444 TRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTA 611
+ L +A + + E+ E++ +KLA +EKR + + K R+++ RA+ A
Sbjct: 703 SELSERAAQERERKEQAKEAKRLKKLAKEEKRLKKKEEKARKAEEKRLQKERAKYA 758
>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 195
Score = 25.8 bits (54), Expect = 6.1
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = +3
Query: 261 PGRVALVADGPLKGKLVSVVDVIDQTRALVDGP--GSGVPRQQI 386
PG V ++ G +GK V V+ ++ T +V GP +GVP +++
Sbjct: 54 PGTVCILLAGRFRGKRVVVLSQLEDT-LVVTGPYKVNGVPIRRV 96
>SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 851
Score = 25.4 bits (53), Expect = 8.1
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = -1
Query: 195 NSNLCTQTLSTKNHVNILCTFRWIVERDDT-XKSHPRLI 82
+ +LC+ LST+++VN+L R ER + ++H LI
Sbjct: 584 HKSLCSLVLSTRDYVNLLGDIRGDGERTPSFLENHRSLI 622
>SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 407
Score = 25.4 bits (53), Expect = 8.1
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +2
Query: 77 QAINLGWLLXVSSLSTIHRKVHKMFT 154
+++ LGW V LS + ++ K+FT
Sbjct: 23 ESLGLGWKQLVKKLSNLMARIKKIFT 48
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,753,321
Number of Sequences: 5004
Number of extensions: 53994
Number of successful extensions: 144
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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