Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_N20
(850 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce... 39 0.001
SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 32 0.089
SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3... 32 0.12
SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces po... 29 0.63
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 28 1.5
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 28 1.9
SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo... 28 1.9
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po... 27 4.4
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 4.4
SPBC56F2.12 |ilv5||acetohydroxyacid reductoisomerase|Schizosacch... 26 7.8
SPCC965.07c |gst2||glutathione S-transferase Gst2|Schizosaccharo... 26 7.8
>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 38.7 bits (86), Expect = 0.001
Identities = 21/66 (31%), Positives = 30/66 (45%)
Frame = +3
Query: 231 LQLLDKFLEGQKYVAGPNLTVADLSLIASVSSLEASDIDFKKYANVKRWYETVKSTAPGY 410
L +D L +Y AG T AD + + + + + K Y N+KRW V S P
Sbjct: 148 LDYIDNHLASNEYFAGEQFTAADPQMCFPIFAAQRDYLSQKPYKNIKRWMRVV-SDRPAC 206
Query: 411 QEANEK 428
+ A EK
Sbjct: 207 RIAAEK 212
>SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 32.3 bits (70), Expect = 0.089
Identities = 16/48 (33%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Frame = +1
Query: 427 KDWRHSRDLSIACLKSE-HLSTRNENLFKITSLELNLTN*AELKRHCL 567
K+ H++ +S+ CL S+ +L ++ +FK ++ELN N ++KR+ L
Sbjct: 58 KNHLHNKHVSLYCLLSDRYLQPPSKRIFKRWNMELNNLNCPDIKRYIL 105
>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 334
Score = 31.9 bits (69), Expect = 0.12
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Frame = +3
Query: 204 AKNEKVQEALQLLDKFLEGQ----KYVAGPNLTVADLSLIASVSSLEASDIDFKKYANVK 371
A+ K+ +AL+ ++ E Q KY P L LS A+ S+ S + +
Sbjct: 116 AEKRKILDALKSRKEYFETQALLEKYGEQPTLAQKKLSNAAAAKSVPGSSSSSSDPMHPQ 175
Query: 372 RWYETVKSTAPGYQEANEKGLEA 440
WY+ V G E +E EA
Sbjct: 176 HWYDRVLEGLVGANENSENNREA 198
>SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 460
Score = 29.5 bits (63), Expect = 0.63
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = -3
Query: 821 KNEKKSIKTIHDLNKHCERDSGIL*NSIIQTSTGISKWVSHDKKRNVSIKCEQIILNLLI 642
KN+ S++TI D NK+C +G++ G+S+ + K + + Q I N L
Sbjct: 160 KNDGFSVETIEDFNKYCHYVAGLV-------GIGLSRLFAQSKLEDPDLAHSQAISNSLG 212
Query: 641 YFQAK 627
F K
Sbjct: 213 LFLQK 217
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/50 (24%), Positives = 27/50 (54%)
Frame = -3
Query: 773 CERDSGIL*NSIIQTSTGISKWVSHDKKRNVSIKCEQIILNLLIYFQAKG 624
C+ D + N+ + + +W+ KK+ + +CE +IL++L + + G
Sbjct: 1138 CQHDDYLQENTSSKNNLLQKEWILITKKKVILEQCEYVILDILNFLKFSG 1187
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 27.9 bits (59), Expect = 1.9
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = -3
Query: 476 SLFKHAIDKSLECLQSFLVGLLVTRSCTLNRLVPS 372
S +K++++ L CL +L+ +TRS T+ + V S
Sbjct: 51 SWYKYSLESGLVCLYLYLIYRWITRSFTVKQTVGS 85
>SPCC191.09c |gst1||glutathione S-transferase
Gst1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 229
Score = 27.9 bits (59), Expect = 1.9
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +3
Query: 168 YPQVFAGAPADKAKNEKVQEALQLLDKFLEGQKYVAGPNLTVADLSLIASVSSLE 332
Y Q + + +NE ++ L +L+ L+ + Y+ T+ADLS I+ + LE
Sbjct: 124 YHQELVISAITRYRNE-IKRVLGVLEDILKDRDYLVANRFTIADLSFISWNNFLE 177
>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1076
Score = 26.6 bits (56), Expect = 4.4
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 363 NVKRWYETVKSTAPGYQEANEKGLEAFKGLVNS 461
+V + YE+++S Y+ ANEK EA +V+S
Sbjct: 739 SVHKNYESLRSQLLEYKAANEKHTEAILSVVSS 771
>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 217
Score = 26.6 bits (56), Expect = 4.4
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Frame = +2
Query: 626 PLPESKLINLI*SVRILSIR-FVFCHVIPILIFQLTF--VLLNFTIFHYHVHNVCSSHEW 796
P+P+ K++ + +LSI+ V H+IP + F L + ++L+ ++F H+ ++ S H
Sbjct: 126 PIPKKKVLKNR-AKSLLSIKSHVHFHLIPFINFFLLYHQIILSHSLF--HISHLISFHFL 182
Query: 797 F*CSFFRF*VYXF 835
F SF F + F
Sbjct: 183 F-FSFLSFPLLSF 194
>SPBC56F2.12 |ilv5||acetohydroxyacid
reductoisomerase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 25.8 bits (54), Expect = 7.8
Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 8/96 (8%)
Frame = +3
Query: 189 APADKAKNEKVQEALQLLDKFLE--GQKYVAGPNLTVADLSLIA-SVSSLEASDIDFKK- 356
+PA+ A NE V+EA Q L + G Y+ T A I + LEA+ +
Sbjct: 291 SPAE-AFNETVEEATQSLYPLIGKYGLDYMFAACSTTARRGAIDWTPRFLEANKKVLNEL 349
Query: 357 YANVKRWYETVKS----TAPGYQEANEKGLEAFKGL 452
Y NV+ E +S +AP Y+E +K LE + L
Sbjct: 350 YDNVENGNEAKRSLEYNSAPNYRELYDKELEEIRNL 385
>SPCC965.07c |gst2||glutathione S-transferase
Gst2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 230
Score = 25.8 bits (54), Expect = 7.8
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = +3
Query: 159 DYFYPQVFAGAPADKAKNEKVQEALQLLDKFLEGQKYVAGPNLTVADLSLI 311
++F+ + A + +NE ++ L +L+ L+ + Y+ T+ADLS I
Sbjct: 122 NFFHHEPVVSA-VTRYRNE-IKRVLGVLEDILKDRDYLVANKYTIADLSFI 170
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,204,553
Number of Sequences: 5004
Number of extensions: 62324
Number of successful extensions: 211
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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