Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_N20
(850 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0247 - 1929000-1929475,1929566-1929614,1929732-1929884 43 3e-04
03_01_0248 - 1932992-1933423,1933440-1933489,1933558-1933606,193... 42 6e-04
01_06_0810 - 32141657-32142105,32142986-32143034,32144961-32145110 38 0.013
03_01_0246 - 1918935-1919689,1919771-1919819,1919894-1920049 37 0.023
03_04_0016 + 16461542-16461566,16462701-16462732,16463015-164631... 36 0.041
01_04_0032 + 15273716-15273865,15274658-15274706,15275737-15276188 36 0.041
07_03_1580 + 27888275-27888360,27888755-27888871,27888964-278890... 36 0.054
01_04_0021 - 15151645-15151809,15152184-15152343,15152548-151530... 35 0.071
01_04_0025 - 15199036-15199493,15199633-15199681,15199782-15199931 34 0.12
10_08_0807 - 20712066-20712290,20712750-20713339,20713415-207134... 33 0.29
10_06_0131 - 11066033-11066251,11066548-11067012,11067102-110681... 33 0.38
02_02_0661 - 12731005-12731238,12732756-12732884,12732969-127331... 31 1.5
03_05_1000 - 29588532-29588768,29589461-29589782,29589875-29590233 29 3.5
04_03_1007 - 21670780-21671368,21671477-21671685 29 4.7
01_01_1176 - 9372879-9373097,9373814-9374278,9374372-9375447,937... 29 4.7
10_02_0035 - 4429737-4429781,4430769-4430890,4431000-4431297,443... 29 6.2
04_04_1090 - 30764340-30764704,30765092-30765204,30765414-307656... 28 8.2
>03_01_0247 - 1929000-1929475,1929566-1929614,1929732-1929884
Length = 225
Score = 43.2 bits (97), Expect = 3e-04
Identities = 35/102 (34%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Frame = +3
Query: 126 FDIGTLYQXFSDYFYPQVFAGAPADKAK---NE-KVQEALQLLDKFLEGQKYVAGPNLTV 293
FD + F F PQ+ PAD+A+ NE K+Q+ L + D+ L KY+AG T+
Sbjct: 110 FDAPSSELVFHLAFAPQL--NIPADEARIAENERKLQQMLNVYDEILAKNKYLAGDEFTL 167
Query: 294 ADLS------LIASVSSLEASDIDFKKYANVKRWYETVKSTA 401
ADLS I + S + F +V RWYE + + A
Sbjct: 168 ADLSHLPNSHYIVNARSPRGKKL-FTSKKHVARWYEEISNRA 208
>03_01_0248 -
1932992-1933423,1933440-1933489,1933558-1933606,
1933688-1933840
Length = 227
Score = 41.9 bits (94), Expect = 6e-04
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Frame = +3
Query: 204 AKNEK-VQEALQLLDKFLEGQKYVAGPNLTVADLSLIASVSSLEASDIDFKKYA---NVK 371
A+NEK +Q+ L + D+ L +Y+AG T+ADLS + + + +S+ K + NV
Sbjct: 141 AENEKKLQQVLNVYDEILSKNEYLAGDEFTLADLSHLPNSHYIVSSERGRKLFTGRKNVA 200
Query: 372 RWYETV 389
RWY+ +
Sbjct: 201 RWYDQI 206
>01_06_0810 - 32141657-32142105,32142986-32143034,32144961-32145110
Length = 215
Score = 37.5 bits (83), Expect = 0.013
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Frame = +3
Query: 171 PQVFAGAPADKAKNE---KVQEALQLLDKFLEGQKYVAGPNLTVADLSLIASVSSLEASD 341
P +F P +K E K+++ L++ + L KY+AG ++VADLS +A L A+
Sbjct: 121 PMMFGAPPDEKVVEENLEKLKKVLEVYEARLTKCKYLAGDYISVADLSHVAGTVCLGATP 180
Query: 342 --IDFKKYANVKRWY 380
Y +VK W+
Sbjct: 181 HASVLDAYPHVKAWW 195
>03_01_0246 - 1918935-1919689,1919771-1919819,1919894-1920049
Length = 319
Score = 36.7 bits (81), Expect = 0.023
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Frame = +3
Query: 198 DKAKNEKVQEALQLLDKFLEGQKYVAGPNLTVADLSLIASVSSLEA---SDIDFKKYANV 368
+K+K + +++ L + ++ LE Y+AG T+ADLS + + L + S F+ NV
Sbjct: 192 EKSKKD-LEKLLDIYEQRLEEAAYLAGDKFTIADLSHLPNADRLASDPRSRRMFEARKNV 250
Query: 369 KRWYETVKS 395
RW+ + S
Sbjct: 251 SRWWNNISS 259
>03_04_0016 +
16461542-16461566,16462701-16462732,16463015-16463100,
16463189-16463305,16463399-16463474,16463695-16463818,
16464482-16464595,16464700-16464947
Length = 273
Score = 35.9 bits (79), Expect = 0.041
Identities = 18/62 (29%), Positives = 33/62 (53%)
Frame = +3
Query: 210 NEKVQEALQLLDKFLEGQKYVAGPNLTVADLSLIASVSSLEASDIDFKKYANVKRWYETV 389
N + LQ LD++L + Y++G + D+++ S+ S A+ Y NV RWY+ +
Sbjct: 26 NVNSEAGLQKLDEYLLTRSYISGYQASKDDMTVFTSLPSAPAAS-----YVNVTRWYDHI 80
Query: 390 KS 395
+
Sbjct: 81 SA 82
>01_04_0032 + 15273716-15273865,15274658-15274706,15275737-15276188
Length = 216
Score = 35.9 bits (79), Expect = 0.041
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Frame = +3
Query: 153 FSDYFYPQVFAGAPADKAKNE---KVQEALQLLDKFLEGQKYVAGPNLTVADLSLIASVS 323
F + P GA NE K+++AL++ + L KY+AG +++AD+S +V
Sbjct: 115 FQCFIVPMFMGGATDIGVVNESLEKLKKALEVYEAQLSKSKYLAGDFISLADISHFPTVY 174
Query: 324 SLEAS--DIDFKKYANVKRWYETV 389
L AS + Y VK W + V
Sbjct: 175 YLLASAHASVLEAYPRVKAWIDDV 198
>07_03_1580 +
27888275-27888360,27888755-27888871,27888964-27889045,
27889710-27889821,27889958-27890071,27890163-27890326
Length = 224
Score = 35.5 bits (78), Expect = 0.054
Identities = 17/55 (30%), Positives = 32/55 (58%)
Frame = +3
Query: 225 EALQLLDKFLEGQKYVAGPNLTVADLSLIASVSSLEASDIDFKKYANVKRWYETV 389
+ L+ L++ L G+ YV+G ++ D+ + A+V S ++ + N RWY+TV
Sbjct: 12 DGLKALEQHLSGKTYVSGNAISKDDIKVFAAVPSKPGAE-----FPNAARWYDTV 61
>01_04_0021 -
15151645-15151809,15152184-15152343,15152548-15153025,
15153243-15153291,15153585-15153734
Length = 333
Score = 35.1 bits (77), Expect = 0.071
Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Frame = +3
Query: 216 KVQEALQLLDKFLEGQKYVAGPNLTVADLSLIASVSSLEASDID--FKKYANVKRWYETV 389
K+++ L + + L G +Y+AG +++ADLS +++ A++ Y +VK W+E +
Sbjct: 141 KLEKVLGVYEARLSGSRYLAGDRISLADLSHFSNMRYFMATEYAGVVDAYPHVKAWWEAL 200
>01_04_0025 - 15199036-15199493,15199633-15199681,15199782-15199931
Length = 218
Score = 34.3 bits (75), Expect = 0.12
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +3
Query: 213 EKVQEALQLLDKFLEGQKYVAGPNLTVADLSLIASVSSLEASDID--FKKYANVKRWYET 386
EK+++ L+ + L G +Y+AG L+ ADL+ A+ F Y +VK W+E
Sbjct: 141 EKLKKVLETYEARLSGSRYLAGDFLSFADLNHFPFTFYFMATPCASLFDAYPHVKAWWEG 200
Query: 387 VKS 395
+ S
Sbjct: 201 LMS 203
>10_08_0807 -
20712066-20712290,20712750-20713339,20713415-20713463,
20713669-20713821
Length = 338
Score = 33.1 bits (72), Expect = 0.29
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = +3
Query: 210 NEKVQEALQLLDKFLEGQKYVAGPNLTVADLSLIASVSSLEASDIDFK---KYANVKRWY 380
++++ + L + ++ LE +Y+AG T+ADLS + + L A + NV RW+
Sbjct: 194 SKELSKVLDIYEQRLEEAEYLAGDKFTLADLSHLPNADRLAADPRTLRMLQSRRNVSRWW 253
Query: 381 ETV 389
V
Sbjct: 254 ADV 256
>10_06_0131 -
11066033-11066251,11066548-11067012,11067102-11068177,
11068269-11068422,11068511-11068601,11069016-11069152
Length = 713
Score = 32.7 bits (71), Expect = 0.38
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Frame = +3
Query: 228 ALQLLDKFLEGQKYVAGPNLTVADLSL---IASVSSLEASDIDFKKYANVKRWYETVKST 398
A +D +L + ++ G LT+AD+++ +A + S KKY N+ RW+ + S
Sbjct: 96 ACSFVDGYLMSRTFLVGHVLTIADITVWSNLAGIGQRWESLRKSKKYQNLVRWFNGIDS- 154
Query: 399 APGYQEANEKGLEAFKG 449
Y++ + + A+ G
Sbjct: 155 --DYKDTLNEVIAAYVG 169
>02_02_0661 -
12731005-12731238,12732756-12732884,12732969-12733193,
12733302-12733478,12733576-12733788
Length = 325
Score = 30.7 bits (66), Expect = 1.5
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +3
Query: 192 PADKAKNEKVQEALQLLDKFLEGQKYVAGPNLTVADLSLIASVSSL-EASDIDFKKYANV 368
P D+A ++ EAL ++ L Q+Y+ G LT AD+ L ++ E + FK +
Sbjct: 202 PYDEAVT-RLYEALDKCEEILSRQRYICGNQLTEADVRLFVTLIRFDEVYAVHFKCNKRL 260
Query: 369 KRWY 380
R Y
Sbjct: 261 LREY 264
>03_05_1000 - 29588532-29588768,29589461-29589782,29589875-29590233
Length = 305
Score = 29.5 bits (63), Expect = 3.5
Identities = 18/43 (41%), Positives = 21/43 (48%)
Frame = +2
Query: 170 SPSIRRCPSRQGQEREGTGSPSAAGQVPRRSEVRGRTEPHRRR 298
S S RR PS+Q G+GS S P + R PHRRR
Sbjct: 11 SVSARRLPSKQPGRHGGSGSSSVPNPYPLFATT--RLLPHRRR 51
>04_03_1007 - 21670780-21671368,21671477-21671685
Length = 265
Score = 29.1 bits (62), Expect = 4.7
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Frame = +3
Query: 201 KAKNEKVQEALQLLDKFLEGQKYVAGPNLTVADLSLIASVSSLEASDIDFKKYANVK--- 371
K E++ + L ++ L KY+AG + AD I ++ + D+D ++Y N +
Sbjct: 161 KQSEEELSKLLDDVEAQLNNGKYLAGDEFSPADSVFIPILARITLLDLD-EEYINCRPRL 219
Query: 372 RWYETVKSTAPGYQEANEKGLEAFK 446
Y T+ P Y+ A K +K
Sbjct: 220 LEYYTLVKQRPSYKVAIGKFFGGWK 244
>01_01_1176 -
9372879-9373097,9373814-9374278,9374372-9375447,
9375534-9375687,9375783-9375879,9376238-9376374
Length = 715
Score = 29.1 bits (62), Expect = 4.7
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = +3
Query: 222 QEALQLLDKFLEGQKYVAGPNLTVADL---SLIASVSSLEASDIDFKKYANVKRWYETV 389
+ A LD +L + ++ L++AD+ S +A S KKY N+ RW+ ++
Sbjct: 96 EAACSFLDGYLASRTFLVSYGLSIADIVVWSNLAGTGQRWESLRRSKKYQNLVRWFNSI 154
>10_02_0035 -
4429737-4429781,4430769-4430890,4431000-4431297,
4431644-4431682
Length = 167
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +2
Query: 194 SRQGQEREGTGSPSAAGQVPRRSEVRGRTEPHRRRPESHRQCLQPGS 334
+R +R+G +P +G RRS GR + R+ E C QP S
Sbjct: 52 ARGSSDRQGAAAPRGSGVEQRRSGWPGR-QARGRQQEEQVSCEQPRS 97
>04_04_1090 - 30764340-30764704,30765092-30765204,30765414-30765638,
30766432-30766553,30766617-30767174,30769207-30769477,
30772175-30773256
Length = 911
Score = 28.3 bits (60), Expect = 8.2
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Frame = +2
Query: 188 CPSRQGQEREGTGSPSAAGQ----VPRRSEVRGRTEPHRRRPESHRQCLQPGS 334
C +R+G R G G+ PR+ V+G RRR E R+ P S
Sbjct: 842 CAARRGAARRAEGDIVGGGKPSSHAPRQDRVQGDGHRARRRREERRRLPPPSS 894
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,419,055
Number of Sequences: 37544
Number of extensions: 401301
Number of successful extensions: 1315
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1313
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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