Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_N19
         (545 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0CRW9 Cluster: Chromosome undetermined scaffold_250, w...    33   4.3  
UniRef50_A7QDP6 Cluster: Chromosome chr15 scaffold_82, whole gen...    32   9.9  

>UniRef50_A0CRW9 Cluster: Chromosome undetermined scaffold_250,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_250,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 163

 Score = 33.1 bits (72), Expect = 4.3
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = -2

Query: 370 HFYNINYVIIHEIQENTTIFDLFNNIHF 287
           +F N+N+ ++H++QE  T  +L+ N HF
Sbjct: 47  NFLNLNFQLLHKVQEFDTYSNLYQNYHF 74


>UniRef50_A7QDP6 Cluster: Chromosome chr15 scaffold_82, whole genome
           shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
           chr15 scaffold_82, whole genome shotgun sequence - Vitis
           vinifera (Grape)
          Length = 177

 Score = 31.9 bits (69), Expect = 9.9
 Identities = 19/70 (27%), Positives = 36/70 (51%)
 Frame = -2

Query: 493 SSSHFTIHSTSDSKMXTRFFFSVLNAFIYCLMS*FEIQSFPHFYNINYVIIHEIQENTTI 314
           S  H   HS+  S++  ++  ++L++ I C++S F + + P+   I +   H +   TT 
Sbjct: 97  SRYHSHHHSSIVSEVLKKWKINILSSSILCILSGFSLCTIPNSKPITHSSCHSM---TTC 153

Query: 313 FDLFNNIHFY 284
             L+ NI  Y
Sbjct: 154 MILWTNIQMY 163


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 394,183,567
Number of Sequences: 1657284
Number of extensions: 5988994
Number of successful extensions: 11328
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 11114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11325
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 35405708495
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)