Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_N18
(472 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62857 Cluster: 40S ribosomal protein S28; n=137; Eukar... 89 5e-17
UniRef50_UPI0000E1F4D9 Cluster: PREDICTED: similar to ribosomal ... 75 8e-13
UniRef50_Q10421 Cluster: 40S ribosomal protein S28; n=13; Eukary... 74 1e-12
UniRef50_Q9SR73 Cluster: 40S ribosomal protein S28-1; n=13; Magn... 66 3e-10
UniRef50_Q4WGB8 Cluster: Ribosomal protein S28e; n=9; Fungi/Meta... 62 5e-09
UniRef50_Q5EMS8 Cluster: 40S ribosomal protein S28-like protein;... 60 2e-08
UniRef50_Q8TVE7 Cluster: 30S ribosomal protein S28e; n=11; cellu... 55 7e-07
UniRef50_Q57U30 Cluster: 40S ribosomal protein S33, putative; n=... 54 2e-06
UniRef50_P54065 Cluster: 30S ribosomal protein S28e; n=27; Archa... 51 1e-05
UniRef50_A2VEJ7 Cluster: IP17744p; n=1; Drosophila melanogaster|... 51 1e-05
UniRef50_Q3LVV1 Cluster: Ribosomal protein S28; n=1; Bigelowiell... 50 3e-05
UniRef50_Q980Q5 Cluster: 30S ribosomal protein S28e; n=14; Archa... 47 2e-04
UniRef50_Q8SQM2 Cluster: 40S RIBOSOMAL PROTEIN S28; n=1; Encepha... 46 4e-04
UniRef50_UPI0000EC9EE1 Cluster: UPI0000EC9EE1 related cluster; n... 45 7e-04
UniRef50_Q3V3R3 Cluster: 16 days neonate cerebellum cDNA, RIKEN ... 45 7e-04
UniRef50_P57710 Cluster: 30S ribosomal protein S28e; n=9; Euryar... 44 0.001
UniRef50_Q5THV0 Cluster: OTTHUMP00000028879; n=1; Homo sapiens|R... 43 0.004
UniRef50_A4ZYV8 Cluster: VirD4-like protein; n=1; Bacillus subti... 35 0.78
UniRef50_A0DRX9 Cluster: Chromosome undetermined scaffold_61, wh... 33 4.2
UniRef50_Q1DCK6 Cluster: Putative uncharacterized protein; n=2; ... 32 7.3
UniRef50_O18118 Cluster: Putative uncharacterized protein pqn-71... 32 7.3
UniRef50_A0E074 Cluster: Chromosome undetermined scaffold_71, wh... 32 7.3
UniRef50_UPI0001552CD6 Cluster: PREDICTED: hypothetical protein;... 31 9.7
UniRef50_A7IXQ7 Cluster: Putative uncharacterized protein b732L;... 31 9.7
UniRef50_A0EH49 Cluster: Chromosome undetermined scaffold_96, wh... 31 9.7
>UniRef50_P62857 Cluster: 40S ribosomal protein S28; n=137;
Eukaryota|Rep: 40S ribosomal protein S28 - Homo sapiens
(Human)
Length = 69
Score = 89.0 bits (211), Expect = 5e-17
Identities = 41/51 (80%), Positives = 46/51 (90%)
Frame = +2
Query: 80 QPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 232
QP LARV KVLGRTGSQGQCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 7 QPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
>UniRef50_UPI0000E1F4D9 Cluster: PREDICTED: similar to ribosomal
protein S28; n=2; Catarrhini|Rep: PREDICTED: similar to
ribosomal protein S28 - Pan troglodytes
Length = 356
Score = 74.9 bits (176), Expect = 8e-13
Identities = 35/44 (79%), Positives = 39/44 (88%)
Frame = +2
Query: 80 QPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPV 211
QP LARV KVLGRTGSQGQCTQV+V+F+ +TSR IIRNVKGPV
Sbjct: 7 QPIKLARVTKVLGRTGSQGQCTQVRVKFMDDTSRSIIRNVKGPV 50
>UniRef50_Q10421 Cluster: 40S ribosomal protein S28; n=13;
Eukaryota|Rep: 40S ribosomal protein S28 -
Schizosaccharomyces pombe (Fission yeast)
Length = 68
Score = 74.1 bits (174), Expect = 1e-12
Identities = 35/49 (71%), Positives = 42/49 (85%)
Frame = +2
Query: 83 PNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDIL 229
P LA+V+KVLGRTGS+G TQV+VEF+ +TSR IIRNVKGPVR+ DIL
Sbjct: 7 PVKLAKVIKVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGPVREDDIL 55
>UniRef50_Q9SR73 Cluster: 40S ribosomal protein S28-1; n=13;
Magnoliophyta|Rep: 40S ribosomal protein S28-1 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 64
Score = 66.5 bits (155), Expect = 3e-10
Identities = 34/53 (64%), Positives = 42/53 (79%)
Frame = +2
Query: 74 MDQPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 232
MD A VVKV+GRTGS+GQ TQV+V+F ++ R I+RNVKGPVR+GDILT
Sbjct: 1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFT-DSDRYIMRNVKGPVREGDILT 52
>UniRef50_Q4WGB8 Cluster: Ribosomal protein S28e; n=9; Fungi/Metazoa
group|Rep: Ribosomal protein S28e - Aspergillus
fumigatus (Sartorya fumigata)
Length = 56
Score = 62.5 bits (145), Expect = 5e-09
Identities = 29/43 (67%), Positives = 35/43 (81%)
Frame = +2
Query: 80 QPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGP 208
QP L +V +VLGRTGS+G TQV+VEF+ +TSR IIRNVKGP
Sbjct: 6 QPVKLVKVTRVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGP 48
>UniRef50_Q5EMS8 Cluster: 40S ribosomal protein S28-like protein;
n=2; Sordariomycetes|Rep: 40S ribosomal protein S28-like
protein - Magnaporthe grisea (Rice blast fungus)
(Pyricularia grisea)
Length = 85
Score = 60.1 bits (139), Expect = 2e-08
Identities = 28/43 (65%), Positives = 34/43 (79%)
Frame = +2
Query: 80 QPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGP 208
QP L +V +VLGRTGS+G TQV+VEF+ + SR IIRNVKGP
Sbjct: 6 QPVKLVKVTRVLGRTGSRGGVTQVRVEFMDDQSRSIIRNVKGP 48
>UniRef50_Q8TVE7 Cluster: 30S ribosomal protein S28e; n=11; cellular
organisms|Rep: 30S ribosomal protein S28e - Methanopyrus
kandleri
Length = 74
Score = 55.2 bits (127), Expect = 7e-07
Identities = 28/47 (59%), Positives = 34/47 (72%), Gaps = 2/47 (4%)
Frame = +2
Query: 95 ARVVKVLGRTGSQGQCTQVKVEFI--GETSRQIIRNVKGPVRDGDIL 229
A VV++LGRTG G+ TQVKV + + R I RNVKGPVR+GDIL
Sbjct: 15 AEVVEILGRTGMAGEVTQVKVRILEGPDKGRIITRNVKGPVREGDIL 61
>UniRef50_Q57U30 Cluster: 40S ribosomal protein S33, putative; n=1;
Trypanosoma brucei|Rep: 40S ribosomal protein S33,
putative - Trypanosoma brucei
Length = 103
Score = 54.0 bits (124), Expect = 2e-06
Identities = 25/49 (51%), Positives = 36/49 (73%), Gaps = 5/49 (10%)
Frame = +2
Query: 101 VVKVLGRTGSQGQCTQVKVEFIG-----ETSRQIIRNVKGPVRDGDILT 232
++KVLGRTGS+G TQV+V + E +R I+RNVKGP ++GD+L+
Sbjct: 43 IIKVLGRTGSRGNVTQVRVRLMAEEGSPEANRTIVRNVKGPCKEGDMLS 91
>UniRef50_P54065 Cluster: 30S ribosomal protein S28e; n=27;
Archaea|Rep: 30S ribosomal protein S28e - Methanococcus
jannaschii
Length = 75
Score = 51.2 bits (117), Expect = 1e-05
Identities = 24/49 (48%), Positives = 35/49 (71%), Gaps = 2/49 (4%)
Frame = +2
Query: 89 VLARVVKVLGRTGSQGQCTQVKVEFIG--ETSRQIIRNVKGPVRDGDIL 229
V A V++V+GRTG G QV+ + +G +T R ++RNVKGPV+ GDI+
Sbjct: 11 VAAEVIEVIGRTGVTGGIIQVRCKILGGKDTGRVLVRNVKGPVKVGDII 59
>UniRef50_A2VEJ7 Cluster: IP17744p; n=1; Drosophila
melanogaster|Rep: IP17744p - Drosophila melanogaster
(Fruit fly)
Length = 73
Score = 50.8 bits (116), Expect = 1e-05
Identities = 21/44 (47%), Positives = 32/44 (72%)
Frame = +2
Query: 95 ARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDI 226
ARV+K+L R G++G T+V+V+ + + Q +R VKGPVR GD+
Sbjct: 7 ARVIKILNRIGARGILTEVRVQLVDQPKMQFMRTVKGPVRLGDV 50
>UniRef50_Q3LVV1 Cluster: Ribosomal protein S28; n=1; Bigelowiella
natans|Rep: Ribosomal protein S28 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 65
Score = 49.6 bits (113), Expect = 3e-05
Identities = 22/43 (51%), Positives = 31/43 (72%)
Frame = +2
Query: 101 VVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDIL 229
V K+L + G +GQ TQV+V+ I + +IRN+KGPVR GDI+
Sbjct: 13 VTKILKKVGKRGQGTQVRVKSITNIKKTLIRNIKGPVRIGDIV 55
>UniRef50_Q980Q5 Cluster: 30S ribosomal protein S28e; n=14;
Archaea|Rep: 30S ribosomal protein S28e - Sulfolobus
solfataricus
Length = 83
Score = 47.2 bits (107), Expect = 2e-04
Identities = 24/47 (51%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Frame = +2
Query: 95 ARVVKVLGRTGSQGQCTQVKVEFIG--ETSRQIIRNVKGPVRDGDIL 229
A V+++L RTG G+ TQV+V + + R + RNVKGPVR GDIL
Sbjct: 21 AEVIQILDRTGVTGEVTQVRVRVLEGRDKGRILTRNVKGPVRVGDIL 67
>UniRef50_Q8SQM2 Cluster: 40S RIBOSOMAL PROTEIN S28; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S28
- Encephalitozoon cuniculi
Length = 65
Score = 46.0 bits (104), Expect = 4e-04
Identities = 25/51 (49%), Positives = 29/51 (56%)
Frame = +2
Query: 77 DQPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDIL 229
+Q V VLGRTG G TQVK+E + R I R VKGPV GDI+
Sbjct: 3 EQQEFFGEVTHVLGRTGGSGLLTQVKMELM-HNKRTIQRAVKGPVAVGDII 52
>UniRef50_UPI0000EC9EE1 Cluster: UPI0000EC9EE1 related cluster; n=1;
Gallus gallus|Rep: UPI0000EC9EE1 UniRef100 entry -
Gallus gallus
Length = 112
Score = 45.2 bits (102), Expect = 7e-04
Identities = 22/52 (42%), Positives = 29/52 (55%)
Frame = -1
Query: 268 SQPPSFTFRFKKSEDVSVTDRSFHVPDDLTAGLPNELDLHLSTLALRTSTAE 113
+QPP R ++ EDVS+ R HV DD A + +EL HLS L L A+
Sbjct: 56 AQPPRLALRLEQGEDVSLPHRPLHVADDGAARVVHELHAHLSALPLGAGPAQ 107
>UniRef50_Q3V3R3 Cluster: 16 days neonate cerebellum cDNA, RIKEN
full-length enriched library, clone:9630014M24
product:hypothetical protein, full insert sequence; n=2;
Mus musculus|Rep: 16 days neonate cerebellum cDNA, RIKEN
full-length enriched library, clone:9630014M24
product:hypothetical protein, full insert sequence - Mus
musculus (Mouse)
Length = 148
Score = 45.2 bits (102), Expect = 7e-04
Identities = 25/43 (58%), Positives = 27/43 (62%)
Frame = -2
Query: 222 SPSRTGPFTFLMI*RLVSPMNSTFT*VHWP*EPVRPXTFTTRA 94
SP RTGP TF M RLVS ++ST T H P EPV P T T A
Sbjct: 84 SPFRTGPLTFQMKERLVSFIDSTPTCAHCPCEPVLPSTLVTLA 126
>UniRef50_P57710 Cluster: 30S ribosomal protein S28e; n=9;
Euryarchaeota|Rep: 30S ribosomal protein S28e -
Halobacterium salinarium (Halobacterium halobium)
Length = 74
Score = 44.4 bits (100), Expect = 0.001
Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Frame = +2
Query: 95 ARVVKVLGRTGSQGQCTQVK--VEFIGETSRQIIRNVKGPVRDGDIL 229
A V++V+G+TG G+ QVK ++ G R I RNV GPVR GD++
Sbjct: 13 AEVIEVVGKTGMHGEAMQVKCRIQEGGNQGRIITRNVLGPVRVGDVI 59
>UniRef50_Q5THV0 Cluster: OTTHUMP00000028879; n=1; Homo sapiens|Rep:
OTTHUMP00000028879 - Homo sapiens (Human)
Length = 57
Score = 42.7 bits (96), Expect = 0.004
Identities = 20/37 (54%), Positives = 26/37 (70%)
Frame = +2
Query: 83 PNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIR 193
P L + KVLGRT SQGQCT+V VEF+ S+++ R
Sbjct: 8 PVKLVKATKVLGRTSSQGQCTRVCVEFMVSQSKRLRR 44
>UniRef50_A4ZYV8 Cluster: VirD4-like protein; n=1; Bacillus
subtilis|Rep: VirD4-like protein - Bacillus subtilis
Length = 796
Score = 35.1 bits (77), Expect = 0.78
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = -1
Query: 247 FRFKKSEDVSVTDRSFHVPDDLTAGLPNE 161
F FKKSE SV +RS +P++LT+ PNE
Sbjct: 569 FSFKKSETESVRERSLMLPEELTSIKPNE 597
>UniRef50_A0DRX9 Cluster: Chromosome undetermined scaffold_61, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_61,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 927
Score = 32.7 bits (71), Expect = 4.2
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 2 HCFSKHASFGARVLIVLSSXLQAKMDQPNVLARV 103
+CFS + A +I LS LQ+K+ PN L +V
Sbjct: 158 NCFSNNRDISANCIICLSEFLQSKLQNPNNLTQV 191
>UniRef50_Q1DCK6 Cluster: Putative uncharacterized protein; n=2;
Cystobacterineae|Rep: Putative uncharacterized protein -
Myxococcus xanthus (strain DK 1622)
Length = 309
Score = 31.9 bits (69), Expect = 7.3
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -1
Query: 247 FRFKKSEDVSVTDRSFHVPDDLTAGLPN 164
FR + ED+ VTD SF P D A +PN
Sbjct: 199 FRLDRMEDILVTDVSFQPPADARADVPN 226
>UniRef50_O18118 Cluster: Putative uncharacterized protein pqn-71;
n=1; Caenorhabditis elegans|Rep: Putative
uncharacterized protein pqn-71 - Caenorhabditis elegans
Length = 330
Score = 31.9 bits (69), Expect = 7.3
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 13 ETRQLWCTCVNCLKLXXTSQNGSTQRSCSCRES 111
ETRQ C C ++ + Q S Q SCSC+ S
Sbjct: 22 ETRQASCGCAQSVQPTCSCQQASQQYSCSCQPS 54
>UniRef50_A0E074 Cluster: Chromosome undetermined scaffold_71, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_71,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 321
Score = 31.9 bits (69), Expect = 7.3
Identities = 19/59 (32%), Positives = 32/59 (54%)
Frame = +2
Query: 53 SSXLQAKMDQPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDIL 229
S+ +Q K++Q + K L + +++ + +G+ R +IRNV GPVR GD L
Sbjct: 251 SAWIQLKIEQKAQEPQSSKSLEEQVPEVALHKLRFKLVGQ-QRTLIRNVMGPVRKGDTL 308
>UniRef50_UPI0001552CD6 Cluster: PREDICTED: hypothetical protein;
n=1; Mus musculus|Rep: PREDICTED: hypothetical protein -
Mus musculus
Length = 165
Score = 31.5 bits (68), Expect = 9.7
Identities = 15/25 (60%), Positives = 16/25 (64%)
Frame = +2
Query: 80 QPNVLARVVKVLGRTGSQGQCTQVK 154
QP +AR KVLG T QGQC Q K
Sbjct: 11 QPIKMARETKVLGTTSLQGQCRQHK 35
>UniRef50_A7IXQ7 Cluster: Putative uncharacterized protein b732L;
n=2; Chlorovirus|Rep: Putative uncharacterized protein
b732L - Paramecium bursaria Chlorella virus NY2A
(PBCV-NY2A)
Length = 76
Score = 31.5 bits (68), Expect = 9.7
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 88 RSCSCRESXRPYWFSGPVYSSEGRVHWGDQPSDHQERER 204
R C+ S R SG +S + R++W +PSD Q+R R
Sbjct: 2 RDIRCKISSR-LSESGREHSQQRRIYWASRPSDMQQRRR 39
>UniRef50_A0EH49 Cluster: Chromosome undetermined scaffold_96, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_96,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 649
Score = 31.5 bits (68), Expect = 9.7
Identities = 13/48 (27%), Positives = 28/48 (58%)
Frame = +2
Query: 74 MDQPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRD 217
+DQ N + ++ V + +Q + T ++ I + ++II+NVK ++D
Sbjct: 67 IDQDNQIEELISVYEKIENQMELTLQNIQLIVDEQKKIIKNVKDNIKD 114
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 369,916,086
Number of Sequences: 1657284
Number of extensions: 6239387
Number of successful extensions: 13719
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 13494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13712
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 26030843530
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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