Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_N18
         (472 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0172 + 13804803-13805293,13805423-13805537,13805766-138058...    41   4e-04
03_01_0468 - 3612079-3612197,3612679-3612850                           36   0.022
07_03_0111 + 13535912-13535972,13536081-13536142,13536418-135365...    27   5.8  
10_08_0648 + 19579299-19580618                                         27   7.6  
03_05_0052 - 20293197-20293310,20293938-20294024,20294133-202942...    27   7.6  
01_07_0231 + 42176598-42178117,42178232-42179753                       27   7.6  
01_06_0020 + 25630728-25631023,25631308-25631548,25631629-256317...    27   7.6  

>10_07_0172 +
           13804803-13805293,13805423-13805537,13805766-13805831,
           13805921-13806009,13806103-13806193,13806312-13806458,
           13806575-13806667,13806745-13806846,13806957-13807541,
           13808523-13808813,13808866-13808937
          Length = 713

 Score = 41.1 bits (92), Expect = 4e-04
 Identities = 21/59 (35%), Positives = 28/59 (47%)
 Frame = -1

Query: 268 SQPPSFTFRFKKSEDVSVTDRSFHVPDDLTAGLPNELDLHLSTLALRTSTAEXFHDTSK 92
           +QPP    R ++ EDV++TDR+  VP D T  +  EL   L  L      A   H   K
Sbjct: 605 AQPPGLPLRLEQGEDVALTDRALDVPHDETVLVVEELHSDLGHLTPGAGAAHHLHHDGK 663


>03_01_0468 - 3612079-3612197,3612679-3612850
          Length = 96

 Score = 35.5 bits (78), Expect = 0.022
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = -1

Query: 268 SQPPSFTFRFKKSEDVSVTDRSFHVPDDLTAGLPNELDLHLSTL 137
           ++PP      ++ EDV++++R+  VP D T  +  ELD HL  L
Sbjct: 10  AKPPGLPLGLEQGEDVALSNRALDVPHDETVLVIQELDSHLGHL 53


>07_03_0111 + 13535912-13535972,13536081-13536142,13536418-13536510,
            13537577-13537649,13537876-13538265,13538337-13538404,
            13539334-13539375,13540211-13540735,13540817-13540974,
            13541078-13541636,13542438-13542500,13542579-13542680,
            13542779-13543096,13543175-13543267,13543489-13543590,
            13543678-13543782,13544190-13544323,13545097-13545280,
            13545701-13545832,13546215-13546327,13546468-13546558,
            13547138-13549339
          Length = 1889

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -1

Query: 232  SEDVSVTDRSFHVPDDLTAGLPN-ELDLHLSTLALRTSTAEXFHDTSKNVGL 80
            SED+ V+DR     D  T G PN E  L+ S LA   ++ E    +++N  +
Sbjct: 1468 SEDIKVSDRELDTGDIDTDGSPNDEKSLNGSNLANDHTSQEPVSCSNENAAV 1519


>10_08_0648 + 19579299-19580618
          Length = 439

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 134 PENQYGRXLSRHEQERWVD 78
           PE+  GR    H+ ERWVD
Sbjct: 316 PESAVGRKPRSHDDERWVD 334


>03_05_0052 -
           20293197-20293310,20293938-20294024,20294133-20294270,
           20295009-20295128,20295236-20295343,20296053-20296133,
           20296216-20296456,20297010-20297305
          Length = 394

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +2

Query: 23  SFGARVLIVLSSXLQAKMDQPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVK 202
           S   RVLI     L    D PN     +  +GR+G  G+   V + F+ +   +I+R+++
Sbjct: 318 SGATRVLITTDVSLVINYDLPNNRELYIHRIGRSGRFGR-KGVAINFVKKEDIRILRDIE 376


>01_07_0231 + 42176598-42178117,42178232-42179753
          Length = 1013

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 86  WVDPFWLVXXSLRQLTHVHQSWR 18
           W + F +V  + R L H+HQS+R
Sbjct: 819 WAERFRIVAGTARGLAHLHQSFR 841


>01_06_0020 +
           25630728-25631023,25631308-25631548,25631629-25631709,
           25632109-25632216,25632329-25632448,25632806-25632943,
           25633064-25633150,25633802-25633915
          Length = 394

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +2

Query: 23  SFGARVLIVLSSXLQAKMDQPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVK 202
           S   RVLI     L    D PN     +  +GR+G  G+   V + F+ +   +I+R+++
Sbjct: 318 SGATRVLITTDVSLVINYDLPNNRELYIHRIGRSGRFGR-KGVAINFVKKEDIRILRDIE 376


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,897,186
Number of Sequences: 37544
Number of extensions: 171228
Number of successful extensions: 373
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)