Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_N18
         (472 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024776-21|AAK68479.1|   65|Caenorhabditis elegans Ribosomal pr...    80   9e-16
Z81129-4|CAB03405.1|  330|Caenorhabditis elegans Hypothetical pr...    32   0.24 
U28929-1|AAN63410.1|  418|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>AC024776-21|AAK68479.1|   65|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 28 protein.
          Length = 65

 Score = 79.8 bits (188), Expect = 9e-16
 Identities = 38/48 (79%), Positives = 43/48 (89%), Gaps = 1/48 (2%)
 Frame = +2

Query: 92  LARVVKVLGRTGSQGQCTQVKVEFIG-ETSRQIIRNVKGPVRDGDILT 232
           LARV KV+GRTGSQGQCTQV+VEFI  + +R IIRNVKGPVR+GDILT
Sbjct: 6   LARVTKVIGRTGSQGQCTQVRVEFINDQNNRSIIRNVKGPVREGDILT 53


>Z81129-4|CAB03405.1|  330|Caenorhabditis elegans Hypothetical
           protein T23F1.6 protein.
          Length = 330

 Score = 31.9 bits (69), Expect = 0.24
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 13  ETRQLWCTCVNCLKLXXTSQNGSTQRSCSCRES 111
           ETRQ  C C   ++   + Q  S Q SCSC+ S
Sbjct: 22  ETRQASCGCAQSVQPTCSCQQASQQYSCSCQPS 54


>U28929-1|AAN63410.1|  418|Caenorhabditis elegans Hypothetical
           protein F09C12.2 protein.
          Length = 418

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +2

Query: 146 QVKVEFIGETSRQIIRNVKGP-VRD 217
           Q+ +E++G    Q+IR +K P +RD
Sbjct: 267 QLLIEYLGTPDEQVIRRIKSPSIRD 291


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,611,041
Number of Sequences: 27780
Number of extensions: 150419
Number of successful extensions: 315
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 314
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)