Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_N15
         (798 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    29   0.58 
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    29   1.0  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    28   1.8  
SPAC823.15 |ppa1||minor serine/threonine protein phosphatase Ppa...    27   4.1  
SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex s...    26   5.4  
SPCC1259.09c |||pyruvate dehydrogenase protein x component|Schiz...    26   7.2  

>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1158

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 685  HKNNSLAIFKLLITTKMLSISSKTCLEHIDL*VII 581
            H N SL +   L  +K + +S+  C+EH+ L + I
Sbjct: 934  HNNQSLLLAASLTLSKFMCLSNNFCMEHLPLLITI 968


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 448 NNSRNSTFGSDSNNSYNTDNGPS 516
           NN+ N  +G+++N +YN +N  S
Sbjct: 614 NNNNNQNYGNNNNQNYNNNNNSS 636


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 522 CIFAPFNAGRSVGSTSPKHEIMTYKSICSKQVFDEMDSI 638
           C FA   A  S+ + SPK +     +  +K++FD +D +
Sbjct: 362 CFFAVLIASYSLANISPKMQSFVSCASAAKKIFDTIDRV 400


>SPAC823.15 |ppa1||minor serine/threonine protein phosphatase
           Ppa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +1

Query: 442 WGNNSRNS--TFGSDSNNSYNTDNGPSIDAYLHPSMLE 549
           WG + R +  TFG D   ++N +NG  + A  H  ++E
Sbjct: 209 WGISPRGAGYTFGPDIAEAFNHNNGLDLIARAHQLVME 246


>SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex
           subunit Tim8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 98

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +1

Query: 718 FPDLYYKILKFLIIE-FDFLFCWL 786
           F D  + I+K   +E F FLFCWL
Sbjct: 71  FLDCNFHIIKRYALEKFGFLFCWL 94


>SPCC1259.09c |||pyruvate dehydrogenase protein x
           component|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 456

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +1

Query: 475 SDSNNSYNTDNGPSIDAYLHPSMLEDPWA 561
           S +N++ N    PS+   +H   +E+PW+
Sbjct: 159 SQANDAVNKSFLPSVSYLIHQYKIENPWS 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,852,886
Number of Sequences: 5004
Number of extensions: 53939
Number of successful extensions: 141
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)