Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_N15
         (798 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0202 + 1605703-1606402,1606681-1606824,1606911-1607063,160...    29   4.3  
06_03_0719 - 23845879-23845881,23846197-23846253,23846786-238470...    28   7.5  

>03_01_0202 +
           1605703-1606402,1606681-1606824,1606911-1607063,
           1607236-1607351,1607737-1607904,1607990-1608214,
           1608711-1608833
          Length = 542

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = +1

Query: 445 GNNSRNSTFGSDSNNSYNTDNGPSI---DAYLHPSMLEDPWAQLRQNTK**PTNQYVLSK 615
           GN  +N T GSD +N +  ++       D+YL     +D W ++  N K  PT   +L +
Sbjct: 2   GNQCQNGTLGSDYHNRFPREHAVGYVQGDSYLDLKKFDDTWPEV-NNFK--PTAASILRR 58

Query: 616 FL 621
            L
Sbjct: 59  GL 60


>06_03_0719 -
           23845879-23845881,23846197-23846253,23846786-23847011,
           23847118-23847245,23847339-23847444,23847543-23847622,
           23847773-23847870,23848015-23848128,23848239-23848379,
           23849012-23849096,23849789-23850016
          Length = 421

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +1

Query: 430 GYNRWGNNSRNSTFGSDSNNSYNTDNGPSIDAYLHP 537
           G +  G NSR   + +++++S NT   PS++ Y+ P
Sbjct: 19  GNSSSGYNSRYPAYPANASSSQNTRYAPSMENYVQP 54


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,374,253
Number of Sequences: 37544
Number of extensions: 312595
Number of successful extensions: 642
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)