Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_N15
         (798 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13876-13|AAA21172.3|  370|Caenorhabditis elegans Prion-like-(q/...    30   1.7  
AF077544-1|AAK39241.2|  231|Caenorhabditis elegans Hypothetical ...    29   2.9  
Z46343-8|CAA86461.1|  549|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z35598-9|CAA84658.1|  549|Caenorhabditis elegans Hypothetical pr...    28   6.7  

>U13876-13|AAA21172.3|  370|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 46
           protein.
          Length = 370

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = +1

Query: 427 SGYNRWGNNSRNST--FGSDSNNSYNTDNGPSIDAY-LHPSMLEDPWAQLRQNTK 582
           +GYN   NN+ N    F +++NN+YN +N  + + Y   P   + P  Q++Q  +
Sbjct: 60  NGYNNNYNNNNNQQQQFYNNNNNNYNNNNYNNNNNYNQQPQGAQQPQQQVQQQVQ 114


>AF077544-1|AAK39241.2|  231|Caenorhabditis elegans Hypothetical
           protein H22K11.3 protein.
          Length = 231

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = +1

Query: 421 RRSGYNRWGNNSRNSTFGSDSNNSYNTDNGPSIDAYLHP 537
           R++GY  W N       G   N      NGP+ + Y  P
Sbjct: 45  RQNGYGMWNNGGEGGGAGEGGNFPMGNWNGPNSNGYSGP 83


>Z46343-8|CAA86461.1|  549|Caenorhabditis elegans Hypothetical
           protein F10F2.9 protein.
          Length = 549

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +1

Query: 418 HRRSGYNRWGNNSRNSTFGSDSNNSYNTDN 507
           + ++GY    NN+RN  +GS S+N+ N +N
Sbjct: 418 YSKNGYG--SNNNRNDGWGSSSSNNNNNNN 445


>Z35598-9|CAA84658.1|  549|Caenorhabditis elegans Hypothetical
           protein F10F2.9 protein.
          Length = 549

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +1

Query: 418 HRRSGYNRWGNNSRNSTFGSDSNNSYNTDN 507
           + ++GY    NN+RN  +GS S+N+ N +N
Sbjct: 418 YSKNGYG--SNNNRNDGWGSSSSNNNNNNN 445


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,741,128
Number of Sequences: 27780
Number of extensions: 304605
Number of successful extensions: 796
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)