Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_N15
         (798 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    26   0.47 
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    25   0.81 
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    25   0.81 
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    25   0.81 
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    25   0.81 
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    24   1.4  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    24   1.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   3.3  

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 25.8 bits (54), Expect = 0.47
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +1

Query: 436 NRWGNNSRNSTFGSDSNNSYN 498
           N + NN+ N+ + + +NN+YN
Sbjct: 327 NNYNNNNYNNNYNNYNNNNYN 347


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 25.0 bits (52), Expect = 0.81
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 448 NNSRNSTFGSDSNNSYNTDNGPSIDAY 528
           NN + S + + +NN+YN +N   +  Y
Sbjct: 87  NNYKYSNYNNYNNNNYNNNNYKKLQYY 113


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 25.0 bits (52), Expect = 0.81
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 448 NNSRNSTFGSDSNNSYNTDNGPSIDAY 528
           NN + S + + +NN+YN +N   +  Y
Sbjct: 87  NNYKYSNYNNYNNNNYNNNNYKKLQYY 113


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 25.0 bits (52), Expect = 0.81
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 448 NNSRNSTFGSDSNNSYNTDNGPSIDAY 528
           NN + S + + +NN+YN +N   +  Y
Sbjct: 87  NNYKYSNYNNYNNNNYNNNNYKKLQYY 113


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 25.0 bits (52), Expect = 0.81
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 448 NNSRNSTFGSDSNNSYNTDNGPSIDAY 528
           NN + S + + +NN+YN +N   +  Y
Sbjct: 87  NNYKYSNYNNYNNNNYNNNNYKKLQYY 113


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +1

Query: 418 HRRSGYNRWGNNSRNSTFGSDSNNSY 495
           ++ S YN + NN  N+ + ++ NN+Y
Sbjct: 89  YKYSNYNNYNNN-YNNNYNNNYNNNY 113


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +1

Query: 418 HRRSGYNRWGNNSRNSTFGSDSNNSY 495
           ++ S YN + NN  N+ + ++ NN+Y
Sbjct: 89  YKYSNYNNYNNN-YNNNYNNNYNNNY 113


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -1

Query: 174 DFPEQRVNVLLSCXATPVTPRLRAKRLRIE-NLR 76
           D  +  V  + +     VTPR +AKRL+ E N+R
Sbjct: 389 DVVQTHVLTIHTIPEVKVTPRFQAKRLKEEANIR 422


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,144
Number of Sequences: 438
Number of extensions: 4100
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)