Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_N14
(707 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1443 + 26575172-26575181,26575709-26575805,26575900-265759... 341 5e-94
01_01_1232 - 9966448-9966708,9966818-9966928,9967142-9967176,996... 148 5e-36
10_08_0036 + 14325793-14326457,14326610-14328035 31 0.90
04_03_0824 + 20086639-20087263,20087282-20087463,20087569-200877... 30 2.1
04_03_0916 + 20794240-20794246,20794585-20796545 28 6.3
11_01_0438 - 3349506-3351239 28 8.4
07_03_0883 + 22280381-22280708,22282008-22282078,22282228-222823... 28 8.4
04_03_0914 + 20788103-20789642,20790036-20790529 28 8.4
02_05_1128 + 34314866-34315294,34315365-34315440,34315548-343156... 28 8.4
>07_03_1443 +
26575172-26575181,26575709-26575805,26575900-26575985,
26576073-26576117,26576788-26576918,26577016-26577126,
26577215-26577472
Length = 245
Score = 341 bits (837), Expect = 5e-94
Identities = 156/213 (73%), Positives = 183/213 (85%)
Frame = +1
Query: 67 MAVRVQFXNHXXVGVFSKLTNTYCLVAXGGSEXFYSVFEAELAETIPVIHASVGGCRIIG 246
MA R+QF N+ VGVFSKLTN YCLVA GGSE FYS FE+ELA+ IPV+ S+GG RIIG
Sbjct: 1 MATRIQFENNCEVGVFSKLTNAYCLVAIGGSENFYSAFESELADVIPVVKTSIGGTRIIG 60
Query: 247 RMTVGNKNGLLVPSSTTDTELQHIRNSLPENVKLQRVEERLSALGNVIACNDYVALVHPD 426
R+ VGNKNGLL+P +TTD ELQH+RN LP+ V +QR++ERLSALGN +ACND+VAL HPD
Sbjct: 61 RLCVGNKNGLLLPHTTTDQELQHLRNCLPDQVVVQRIDERLSALGNCVACNDHVALTHPD 120
Query: 427 LDKDTEEILADTLNVEVFRQTIAGNVLVGSYTALSNRGGLVHPKTNIQDQDELSSLLQVP 606
LDK TEE++AD L VEVFRQTIAGN+LVGSY A++NRGGLVHP T+I+D DELS+LLQVP
Sbjct: 121 LDKATEELIADVLGVEVFRQTIAGNILVGSYCAITNRGGLVHPHTSIEDLDELSTLLQVP 180
Query: 607 LVAGTVNRGSDVVXAGMVVNDWCAFCGLDTTST 705
LVAGTVNRGS+V+ AGM VNDW AFCG DTT+T
Sbjct: 181 LVAGTVNRGSEVIAAGMTVNDWTAFCGSDTTAT 213
>01_01_1232 -
9966448-9966708,9966818-9966928,9967142-9967176,
9967469-9967599,9967683-9967779,9967907-9967916
Length = 214
Score = 148 bits (358), Expect = 5e-36
Identities = 65/92 (70%), Positives = 81/92 (88%)
Frame = +1
Query: 430 DKDTEEILADTLNVEVFRQTIAGNVLVGSYTALSNRGGLVHPKTNIQDQDELSSLLQVPL 609
D+ TEEI++D L VEVFRQTIAGN+LVGS+ A SN+GGLVHP+T+++DQ ELS+LL+VPL
Sbjct: 90 DQGTEEIISDVLGVEVFRQTIAGNILVGSFCAFSNKGGLVHPQTSVEDQAELSTLLEVPL 149
Query: 610 VAGTVNRGSDVVXAGMVVNDWCAFCGLDTTST 705
AG++NRGS+VV AGM VNDW AFCG DTT+T
Sbjct: 150 AAGSINRGSEVVAAGMAVNDWAAFCGADTTAT 181
Score = 133 bits (321), Expect = 1e-31
Identities = 73/192 (38%), Positives = 115/192 (59%), Gaps = 13/192 (6%)
Frame = +1
Query: 67 MAVRVQFXNHXXVGVFSKLTNTYCLVAXGGSEXFYSVFEAELAETIPVIHASVGGCRIIG 246
MA RV+F N +GVF++LTN YC++ GG+E F+SVFE+ELA+ +PV+ S+GG RIIG
Sbjct: 1 MASRVRFENSSEIGVFARLTNAYCVLPDGGAENFFSVFESELADVVPVVRTSIGGTRIIG 60
Query: 247 RMTVGNKNGLLVPSSTTDTELQHIRNSLPENVKLQRVEE-------RLSALGNVI----- 390
RM VGNKNGLL+P +TTD ELQH++NSLP+ + + + R + GN++
Sbjct: 61 RMCVGNKNGLLLPHTTTDQELQHLKNSLPDQGTEEIISDVLGVEVFRQTIAGNILVGSFC 120
Query: 391 ACNDYVALVHPDLDKDTEEILADTLNVEVFRQTI-AGNVLVGSYTALSNRGGLVHPKTNI 567
A ++ LVHP + + L+ L V + +I G+ +V + A+++ T
Sbjct: 121 AFSNKGGLVHPQTSVEDQAELSTLLEVPLAAGSINRGSEVVAAGMAVNDWAAFCGADTTA 180
Query: 568 QDQDELSSLLQV 603
+ + S+ ++
Sbjct: 181 TELSVVESVFRL 192
>10_08_0036 + 14325793-14326457,14326610-14328035
Length = 696
Score = 31.1 bits (67), Expect = 0.90
Identities = 36/145 (24%), Positives = 61/145 (42%), Gaps = 4/145 (2%)
Frame = +1
Query: 136 CLVAXGGSEXFYSVFEAELAETIPVIHASVGGCRIIGRMTVGNKNGLLVPSSTTDTELQH 315
CL A G + L I ++ ++ R IG T N + + V + D E Q
Sbjct: 408 CLSASGDHQLHRLDSRQGLLAGIAQVNKAIKDARHIGDRT-SNIDVIKVQAGNLDEEAQR 466
Query: 316 IRNSLPENVKLQRVEERLSALGN----VIACNDYVALVHPDLDKDTEEILADTLNVEVFR 483
I+ +P N + VE LGN + A +Y ++ D D+ EI+ +N E
Sbjct: 467 IQELVPSNFNIIGVEVMHPQLGNRSYAIGAQQNYESMKTYLKDADSFEIVIAFVNSE--- 523
Query: 484 QTIAGNVLVGSYTALSNRGGLVHPK 558
+A + + + + R G +HP+
Sbjct: 524 GMLAYDCVWKFCISSTPRSGCLHPR 548
>04_03_0824 +
20086639-20087263,20087282-20087463,20087569-20087724,
20087867-20087989,20088079-20088247,20088384-20088466,
20088641-20088742,20089246-20089359,20089735-20089811,
20089884-20089962,20090060-20090128,20090235-20090410,
20090460-20090561,20090678-20090768,20090878-20090976,
20091141-20091326
Length = 810
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +1
Query: 481 RQTIAGNVLVGSYTALSNRGGLVHPKTNIQDQDELSSLLQV 603
R + A ++G A S+ GLVHP T+ Q +SS QV
Sbjct: 73 RPSAAAAAVLGEPVAASDDHGLVHPSTDFASQALVSSTQQV 113
>04_03_0916 + 20794240-20794246,20794585-20796545
Length = 655
Score = 28.3 bits (60), Expect = 6.3
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = +1
Query: 220 SVGGCRIIGRMTVGNKNGLLVPSSTTDTELQHIRNSLPENVKLQRVEERLSALGNVIAC 396
S GGC + + + SS TD E HIR + E + Q V +R +G + AC
Sbjct: 244 SNGGCSVWHNELLNIRKNQCTGSSNTDGETFHIRLAAQE-LYSQEVNKRGMVIGVLSAC 301
>11_01_0438 - 3349506-3351239
Length = 577
Score = 27.9 bits (59), Expect = 8.4
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Frame = +1
Query: 178 FEAELAETIPVIHASVGGCRIIGRMTVGNKN---GLLVPSSTTDTELQHIRNSLPE--NV 342
FE A TIP ++ S +GR+ VG N G + + T TEL + LP +
Sbjct: 400 FEVLAASTIPRMYHSSATLDTLGRVLVGGSNPHVGYVFDNVTYPTELS-LEAFLPPYFDA 458
Query: 343 KLQRVEERLSALGNVIACNDYVAL 414
+L V RL A + + + A+
Sbjct: 459 RLDGVRPRLVAAPSEVGYGEAAAV 482
>07_03_0883 +
22280381-22280708,22282008-22282078,22282228-22282345,
22282406-22282521,22283946-22284023,22284123-22284242,
22284332-22284391
Length = 296
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +3
Query: 12 ASSCAIHHQGKG*TQNQNHGGSRSIXKSXXSGXVQ*INKHILPCR 146
+SS IHH G ++ GG +G + + K +LP R
Sbjct: 51 SSSAGIHHHSAGRYGHEGGGGGAVAGDGAPAGSISSVAKSLLPAR 95
>04_03_0914 + 20788103-20789642,20790036-20790529
Length = 677
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +1
Query: 220 SVGGCRIIGRMTVGNKNGLLVPSSTTDTELQHIRNSLPENVKLQRVEERLSALGNVIACN 399
S GGC I + + SS TD E HIR + E + ++ +R+ +G VI+ +
Sbjct: 398 SNGGCSIWHNELLNIRKSQCSDSSNTDGEALHIRLA-AEELYSKKANKRVMVIGVVISAS 456
>02_05_1128 +
34314866-34315294,34315365-34315440,34315548-34315631,
34315729-34315784,34316302-34316358,34316459-34316508,
34316587-34316739,34316842-34316992,34317469-34317633
Length = 406
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Frame = +3
Query: 480 QTNNSGKRTCWFLHCVEQPRRAG--TPED-KYTG 572
+T +GK W L+ EQ RR G P D KYTG
Sbjct: 366 KTKKNGKGKAWLLNKKEQLRRRGREVPADTKYTG 399
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,344,982
Number of Sequences: 37544
Number of extensions: 393724
Number of successful extensions: 969
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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