Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_N14
(707 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99709-5|CAB16860.1| 246|Caenorhabditis elegans Hypothetical pr... 281 3e-76
AF068712-1|AAC17779.1| 500|Caenorhabditis elegans Hypothetical ... 29 4.3
Z49909-5|CAD59140.1| 594|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z49909-4|CAA90108.1| 876|Caenorhabditis elegans Hypothetical pr... 28 5.7
AY303577-1|AAP57299.1| 876|Caenorhabditis elegans cell death-re... 28 5.7
AL132859-4|CAB60492.1| 365|Caenorhabditis elegans Hypothetical ... 28 5.7
Z83217-4|CAB05683.2| 1178|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical pr... 28 7.5
>Z99709-5|CAB16860.1| 246|Caenorhabditis elegans Hypothetical
protein C47B2.5 protein.
Length = 246
Score = 281 bits (690), Expect = 3e-76
Identities = 128/213 (60%), Positives = 170/213 (79%)
Frame = +1
Query: 67 MAVRVQFXNHXXVGVFSKLTNTYCLVAXGGSEXFYSVFEAELAETIPVIHASVGGCRIIG 246
MA+RV + VGVF LTN+YCLV GG++ FYS+ EAEL++ IPV+H S+ RI+G
Sbjct: 1 MALRVDYEGSNDVGVFCTLTNSYCLVGVGGTQNFYSILEAELSDLIPVVHTSIASTRIVG 60
Query: 247 RMTVGNKNGLLVPSSTTDTELQHIRNSLPENVKLQRVEERLSALGNVIACNDYVALVHPD 426
R+TVGN++GLLVP++TTD ELQH+RNSLP+ V ++RV+ERLSALGNVIACND+VA+VH +
Sbjct: 61 RLTVGNRHGLLVPNATTDQELQHLRNSLPDEVAIRRVDERLSALGNVIACNDHVAIVHAE 120
Query: 427 LDKDTEEILADTLNVEVFRQTIAGNVLVGSYTALSNRGGLVHPKTNIQDQDELSSLLQVP 606
+ +TE+ L + L VEVFR ++A N LVGSY LS+ G LV +T + Q E+++LLQ+P
Sbjct: 121 ISAETEQALVEVLKVEVFRVSLAQNSLVGSYCILSSNGCLVAARTPPETQREIAALLQIP 180
Query: 607 LVAGTVNRGSDVVXAGMVVNDWCAFCGLDTTST 705
+VAGT NRGS+++ AGMVVNDW AFCGLD+TST
Sbjct: 181 VVAGTCNRGSELIGAGMVVNDWVAFCGLDSTST 213
>AF068712-1|AAC17779.1| 500|Caenorhabditis elegans Hypothetical
protein T09H2.1 protein.
Length = 500
Score = 28.7 bits (61), Expect = 4.3
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Frame = +1
Query: 331 PENVKLQRVE-ERLSALGNVIACNDYVALVHPDLDKDTEEILADTLNVEVFRQTIAGNVL 507
PE VK+ R E L+ I+ D + + + + + +A LNV +FRQT +
Sbjct: 328 PEVVKIAREELVHLTGGHRSISLTDKTSTPYLNAVINEVQRIASILNVNIFRQTSEDTTV 387
Query: 508 ----VGSYTALSNRGGLVHPKTNI 567
+ + TAL+ L+H N+
Sbjct: 388 NGQPIAAGTALTTHLSLIHTDENL 411
>Z49909-5|CAD59140.1| 594|Caenorhabditis elegans Hypothetical
protein C14A4.4b protein.
Length = 594
Score = 28.3 bits (60), Expect = 5.7
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +1
Query: 244 GRMTVGNKNGLLVPSSTTDTELQHIRNSLPE-NVKLQRVEERLSALGNVIACNDYVALVH 420
G V NGL P + D EL NS P N ++R E+RL+AL N + + A+
Sbjct: 40 GAGLVRESNGL--PKAGADYELY---NSYPTFNTFMKRSEQRLNALMNKVTKSIGCAMRV 94
Query: 421 PDLDKDTE 444
PD+ E
Sbjct: 95 PDVGSSVE 102
>Z49909-4|CAA90108.1| 876|Caenorhabditis elegans Hypothetical
protein C14A4.4a protein.
Length = 876
Score = 28.3 bits (60), Expect = 5.7
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +1
Query: 244 GRMTVGNKNGLLVPSSTTDTELQHIRNSLPE-NVKLQRVEERLSALGNVIACNDYVALVH 420
G V NGL P + D EL NS P N ++R E+RL+AL N + + A+
Sbjct: 40 GAGLVRESNGL--PKAGADYELY---NSYPTFNTFMKRSEQRLNALMNKVTKSIGCAMRV 94
Query: 421 PDLDKDTE 444
PD+ E
Sbjct: 95 PDVGSSVE 102
>AY303577-1|AAP57299.1| 876|Caenorhabditis elegans cell
death-related nuclease 3 protein.
Length = 876
Score = 28.3 bits (60), Expect = 5.7
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +1
Query: 244 GRMTVGNKNGLLVPSSTTDTELQHIRNSLPE-NVKLQRVEERLSALGNVIACNDYVALVH 420
G V NGL P + D EL NS P N ++R E+RL+AL N + + A+
Sbjct: 40 GAGLVRESNGL--PKAGADYELY---NSYPTFNTFMKRSEQRLNALMNKVTKSIGCAMRV 94
Query: 421 PDLDKDTE 444
PD+ E
Sbjct: 95 PDVGSSVE 102
>AL132859-4|CAB60492.1| 365|Caenorhabditis elegans Hypothetical
protein Y39C12A.8 protein.
Length = 365
Score = 28.3 bits (60), Expect = 5.7
Identities = 10/41 (24%), Positives = 22/41 (53%)
Frame = +1
Query: 328 LPENVKLQRVEERLSALGNVIACNDYVALVHPDLDKDTEEI 450
+P++ K +E+ +GN+ C D+ +++ D +EI
Sbjct: 3 IPKSAKSDYTKEQKDLVGNICQCKDFYKILNVDKKASPDEI 43
>Z83217-4|CAB05683.2| 1178|Caenorhabditis elegans Hypothetical
protein C10C6.6 protein.
Length = 1178
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = -3
Query: 411 CYIVVTGYDVTEGTKPFLHAL*FHVLRQTVSNVL*FC 301
CY++ TG++ ++G L + F V + T +N+ FC
Sbjct: 362 CYVIRTGFNTSQG--KLLRTIMFGVKKATANNLETFC 396
>Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical
protein F52B5.3 protein.
Length = 1425
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 274 LLVPSSTTDTELQHIRNSLPENVKLQRVEERLSALGNVI 390
++ P S ELQ +RNSLP + +V + +S+ VI
Sbjct: 163 VIPPKSKCSKELQKVRNSLPASKYCDQVLKSISSCNVVI 201
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,170,007
Number of Sequences: 27780
Number of extensions: 329374
Number of successful extensions: 761
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -