Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_N08
         (725 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0336 - 4414227-4414608,4414690-4414841,4414931-4415029,441...    81   9e-16
06_03_0781 - 24533949-24534330,24534666-24534817,24534901-245349...    79   4e-15
08_02_1097 + 24284494-24284496,24284946-24285407,24285476-242864...    30   2.2  
04_01_0628 - 8266494-8266501,8266578-8266875,8268055-8268313,826...    29   2.8  
01_05_0750 - 24895954-24896175,24896774-24897304,24897420-24897869     29   5.0  
12_01_0812 - 7460448-7460507,7460595-7460672,7460772-7460981,746...    28   8.7  

>04_01_0336 -
           4414227-4414608,4414690-4414841,4414931-4415029,
           4415131-4415340
          Length = 280

 Score = 81.0 bits (191), Expect = 9e-16
 Identities = 40/110 (36%), Positives = 64/110 (58%), Gaps = 5/110 (4%)
 Frame = +1

Query: 409 YGNQLAAQGKEAVQRELHKFVPVSRLRYYFAVDTRYVIRKLMLIVFPYTHKEWMVKYDQD 588
           YG +      E +Q  ++++   S  +YYF V+ +YV  KL +I+FP+ H+    +  + 
Sbjct: 55  YGEKFLGSSSEFMQSNINRYF--SNPQYYFHVNDQYVRNKLKVILFPFLHRGHWTRISEP 112

Query: 589 TPVQ-----PRYDINAPDLYIPSMGYVTYVLLAGFMLGLXHRFSPEQIGI 723
              +     P YDINAPDLYIP M + ++++LAGF LG   +F+PE I +
Sbjct: 113 VGGRLSYKPPIYDINAPDLYIPFMAFGSFIILAGFTLGFMGKFTPEAINL 162


>06_03_0781 -
           24533949-24534330,24534666-24534817,24534901-24534999,
           24535127-24535302,24535983-24536292
          Length = 372

 Score = 79.0 bits (186), Expect = 4e-15
 Identities = 40/108 (37%), Positives = 64/108 (59%), Gaps = 5/108 (4%)
 Frame = +1

Query: 409 YGNQLAAQGKEAVQRELHKFVPVSRLRYYFAVDTRYVIRKLMLIVFPYTHKEWMVKYDQD 588
           YG +      E +Q  + +++  S  +YYF V+++YV  KL +I+FP+ H+    +  + 
Sbjct: 147 YGEKFLGSSSEFMQSNITQYL--SNPQYYFQVNSQYVRNKLKVILFPFLHRGHWTRITEP 204

Query: 589 TPVQPRY-----DINAPDLYIPSMGYVTYVLLAGFMLGLXHRFSPEQI 717
              +  Y     DINAPDLYIP M + TYV++AG+ LG+  RF+PE +
Sbjct: 205 VGGRLSYKPPIQDINAPDLYIPLMAFGTYVVIAGYALGVLGRFTPEAL 252


>08_02_1097 +
           24284494-24284496,24284946-24285407,24285476-24286450,
           24286566-24286655,24286760-24287021,24287447-24287472
          Length = 605

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 501 RKIVPQPRDWHKLVQFSLHSLLALSRELVA 412
           R +V  PR +HK+    LH LL ++R L+A
Sbjct: 115 RMVVQMPRVFHKVCLPKLHQLLVIARRLLA 144


>04_01_0628 -
           8266494-8266501,8266578-8266875,8268055-8268313,
           8268892-8269052,8269553-8269884,8270947-8271265,
           8271335-8271420,8271600-8271684
          Length = 515

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +3

Query: 351 PGANKLYAATTCSPGHGYSIRQPARGSRQGGCATRIAQVCASLEAAVLFCGRYKIC 518
           PGA     +   S  +G    Q A  ++  G   R+A     LEA V +C R++ C
Sbjct: 387 PGAMDSAVSKHLSHAYGTLATQVASIAQNEGLGKRLAHGYPFLEAEVAYCARHEYC 442


>01_05_0750 - 24895954-24896175,24896774-24897304,24897420-24897869
          Length = 400

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +3

Query: 351 PGANKLYAA-TTCSPGHGYSIRQPARGSRQGG 443
           PG + L     +C PGHG SI    + S +GG
Sbjct: 228 PGTSNLRVEHVSCGPGHGISIGSLGKESEEGG 259


>12_01_0812 -
           7460448-7460507,7460595-7460672,7460772-7460981,
           7461095-7461142,7461270-7461455,7461653-7461656,
           7461766-7461893
          Length = 237

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +1

Query: 460 HKFVPVSRLRYYFAVDTRYVIRKLML 537
           HK + +S  R++F +D  Y++RK ++
Sbjct: 68  HKKIVISETRFFFYLDRYYILRKSLV 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,327,653
Number of Sequences: 37544
Number of extensions: 456246
Number of successful extensions: 1265
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1263
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)