Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_N06
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    36   0.005
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom...    27   2.8  
SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein su...    27   2.8  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    27   3.7  
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    25   8.6  
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    25   8.6  

>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 536

 Score = 36.3 bits (80), Expect = 0.005
 Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 5/124 (4%)
 Frame = +3

Query: 279 YVRTFFKHFRKCNLTSYVLFDGSYETRKLKTAYHRLRSKIYGASCLDPVTQGCMQIFPLL 458
           Y    F  +   N     +FDG     K +   +R + KI            C+ I   +
Sbjct: 77  YHNDLFLTYSLSNAYREYIFDGGLPFSKHQVRVNRYQQKINDLR--SAYINLCVPIAQHV 134

Query: 459 IRNVFKEALIDIGVAYTVCEFEADDEIAAMARHLNCPVLSYDSDFYIYNV-----LYIPF 623
           +  + K  +I       VC  EAD   A  A+ L+  +LS DSDF +Y++      YIP 
Sbjct: 135 LMGLAKAKVI-------VCNEEADKYCAFQAKKLDAVILSQDSDFLLYDIDTPHYGYIPL 187

Query: 624 NTVD 635
            ++D
Sbjct: 188 QSLD 191


>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 595

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -1

Query: 742 FLLIPSKLLVNCSNLYILQFKTCFLAPSIITHFGLKSTVLN 620
           ++L+  +L+     +++ +   C+     +  FGLKS VLN
Sbjct: 251 YILLKLRLIKGKILIFVNEINRCYRLKLFLEQFGLKSLVLN 291


>SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein
           subunit S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 224

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +3

Query: 282 VRTFFKHFRKCNLTSYVLFDGSYETRKLKTAYHRLRSK 395
           + TFF + RKCN+    L   +YE   +  A     S+
Sbjct: 143 LETFFSYLRKCNMWDLKLQAKAYEYESIDDALKNFESQ 180


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = -3

Query: 491  INQSLFENITYEQGEDLHASLSNW-I*A*RSIYLGSQ--SMICSFKFSSL 351
            +    FE+  YE  + +++S+SNW + A   +YLG    ++ C+ K +S+
Sbjct: 1197 VGDECFESKNYEAAKLMYSSISNWSMLATTLVYLGEYQGAVDCARKANSI 1246


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1028

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 736 LIPSKLLVNCSNLYILQFKTCFLAPSII 653
           L+P     NC N Y  Q +T FL+P  I
Sbjct: 189 LVPIVNGENCFNFYETQMETNFLSPEFI 216


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 540 AAMARHLNCPVLSYDSDFYIYNVLYIPFNTV 632
           A   RH     L+ ++ F  YN  YIP N++
Sbjct: 431 AMSERHYPLVSLAPEASFLYYNGFYIPLNSI 461


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,803,867
Number of Sequences: 5004
Number of extensions: 55327
Number of successful extensions: 146
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)