Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_N06
         (745 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              27   0.14 
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            27   0.14 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.3  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   9.2  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 27.5 bits (58), Expect = 0.14
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -3

Query: 548 HSRDFIVCLKFAYCVRNTNINQSLFENITYEQGEDL 441
           HS++++V + F++  RN N N    E   + + EDL
Sbjct: 232 HSKEYLVSIMFSHYDRNNNGNLEREELEQFAENEDL 267


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 27.5 bits (58), Expect = 0.14
 Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +3

Query: 594 YIYNVLYIPFNTVDFKPKCVIID-GAKKHVLNCKIYRFEQLTNSXEGINRK 743
           Y ++   +P+   +F P+C + +     +V NC++     L  S E +  K
Sbjct: 138 YNFDYPQVPYTVKNFHPRCAVNNYNDPSNVRNCELVGLHDLDQSQEYVRSK 188


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 14/58 (24%), Positives = 26/58 (44%)
 Frame = +3

Query: 216 QLYQRLNSFSAFGGDYDKFFQYVRTFFKHFRKCNLTSYVLFDGSYETRKLKTAYHRLR 389
           +L+ + N+     GD       +RTF   +   +     LF  + + R++  AY+ LR
Sbjct: 241 ELHLQRNAIVEIAGDALTGLTVLRTFNASYNSLDSLPEGLFASTRDLREIHLAYNGLR 298


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 93  LPSSLGVRGLTPYINKHEDIFLKXFVLYDSCVVIDGHSL 209
           L S LG + +TP I KH    LK   ++D+C V + H +
Sbjct: 306 LLSVLGYKYITPLIQKH----LK---IHDTCGVHNLHGM 337


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,711
Number of Sequences: 438
Number of extensions: 3941
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)