Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_N04
         (718 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    27   0.15 
AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    23   1.9  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   7.6  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   7.6  

>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 27.1 bits (57), Expect = 0.15
 Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
 Frame = +1

Query: 13  VFLFVIHQYVAKMPQQK-ELGXQCIKXMLLCITAIFVLTSALTISV--GTTIYAIYHDIS 183
           +FL +   Y+    ++K     + +K  ++ I  + +LTS++T+ V   + +YA  H   
Sbjct: 17  LFLLICDSYLKIYHKEKYRKFCRILKYFIIAIYVLTILTSSVTLHVCFNSYMYAFTHIFF 76

Query: 184 FFLSPYAFSPAIFVIAIGVIMLF 252
           FF     F   I +I + ++ +F
Sbjct: 77  FFAICCDF---IALIVVNIVHVF 96


>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +2

Query: 362 LPTVFAARSHNFWTKNLGXHFLYTTSMLRRR 454
           +  V+   ++NFW K     FL    +L+ R
Sbjct: 63  ISNVYQILAYNFWKKKYWSEFLANLKLLKGR 93


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +3

Query: 249 IRLSLRLXRCPEREYLLGQHFRSDPXHRVHSGDRRGHH 362
           IR   R  +C    +LLG   +++     HS + RG +
Sbjct: 664 IRAKKRWSQCMYMYFLLGFRLQANDELSAHSKEIRGEN 701


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +3

Query: 249 IRLSLRLXRCPEREYLLGQHFRSDPXHRVHSGDRRGHH 362
           IR   R  +C    +LLG   +++     HS + RG +
Sbjct: 664 IRAKKRWSQCMYMYFLLGFRLQANDELSAHSKEIRGEN 701


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,380
Number of Sequences: 336
Number of extensions: 3032
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19051215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)