Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_N04
(718 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0389 + 3437383-3437651,3438279-3438396,3438914-3439018,343... 30 1.6
04_01_0162 + 1845295-1846317,1846430-1846565,1848436-1848626,184... 30 1.6
08_02_0594 + 19089094-19090049,19090673-19091162 30 2.1
11_08_0021 + 27716298-27716478,27717137-27717309,27717408-277175... 29 4.9
04_04_0739 - 27693768-27694305,27694765-27694912,27694987-276951... 29 4.9
03_06_0586 + 34917836-34918038,34918155-34918488,34918560-349187... 29 4.9
06_03_1398 - 29867458-29867582,29868460-29868577,29868665-298687... 28 6.4
06_03_0963 + 26368959-26369462,26370900-26371205 28 6.4
03_06_0483 - 34226496-34226864,34227140-34227360,34227677-342279... 28 6.4
03_02_0569 - 9528027-9529256,9530019-9530260,9530374-9531161,953... 28 6.4
11_04_0305 - 16162063-16162096,16162282-16164365,16165283-161653... 28 8.5
08_02_0825 - 21570628-21570715,21571436-21571812,21572364-215727... 28 8.5
07_01_0882 + 7342606-7342842,7343601-7344245,7344515-7344907 28 8.5
01_05_0359 + 21350580-21350829,21350990-21351064,21351156-213512... 28 8.5
>08_01_0389 +
3437383-3437651,3438279-3438396,3438914-3439018,
3439983-3440180,3440269-3440355
Length = 258
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 226 IAIGVIMLFVSLFGCXGALKESTC 297
I +GVI+ S+FGC GA + C
Sbjct: 96 IGVGVILFITSIFGCAGASRGGCC 119
>04_01_0162 +
1845295-1846317,1846430-1846565,1848436-1848626,
1848780-1848887,1849001-1849204,1849294-1849525,
1849602-1849751,1849830-1850007,1850416-1850519,
1850611-1850933,1851274-1851459,1851672-1851899
Length = 1020
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 524 STPPLEGPALALPTSRSPIRAAPSP 598
+ PP +GP + P+S+ P AAP P
Sbjct: 94 AAPPPQGPFTSAPSSQGPFAAAPQP 118
>08_02_0594 + 19089094-19090049,19090673-19091162
Length = 481
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = -2
Query: 297 AGTL-FQGTXAAEERDE*HYDANRDDKDSRGEGVWRQEERDV 175
AGT+ + T E + + A+ D+ D +GVW+Q+ER+V
Sbjct: 275 AGTMSYPDTGQCEHIECSYSTASTDEVDLTSDGVWQQQERNV 316
>11_08_0021 + 27716298-27716478,27717137-27717309,27717408-27717578,
27717967-27718077,27718168-27718245,27718642-27718832,
27718873-27718958,27719202-27719206,27719301-27719378,
27719465-27719527,27719597-27719680,27720049-27720209,
27720377-27720416,27720774-27720893,27720993-27721211,
27721927-27722100,27722202-27722883,27722986-27723185,
27723269-27723407,27723502-27723677
Length = 1043
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/60 (25%), Positives = 27/60 (45%)
Frame = -2
Query: 318 HCENVDQAGTLFQGTXAAEERDE*HYDANRDDKDSRGEGVWRQEERDVMVDRVNRSTHGD 139
H + V + G G ++ DE D + DD+DS + R+E + + R + G+
Sbjct: 907 HLKEVQEDGDDGDGAEDLDDDDEEEEDTDEDDEDSDDDDDVREETEEEFLQRYAAAAAGE 966
>04_04_0739 -
27693768-27694305,27694765-27694912,27694987-27695188,
27695802-27695864,27695865-27696120,27697811-27697953
Length = 449
Score = 28.7 bits (61), Expect = 4.9
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +1
Query: 187 FLSPYAFSPAIFVIAIGVIMLFVSLFGC 270
F++P F +FV+ +G++ ++VS F C
Sbjct: 119 FINPCIFHTGLFVLQVGLLAIWVSPFFC 146
>03_06_0586 +
34917836-34918038,34918155-34918488,34918560-34918712,
34918808-34919107,34919498-34919576,34919687-34919793,
34919861-34919979,34920532-34920850
Length = 537
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 142 SVGTTIYAIYHDISFFLSPYAFSPAIF 222
SV + +I+HD S F PY F P F
Sbjct: 365 SVNLDVVSIHHDPSVFADPYKFDPNRF 391
>06_03_1398 -
29867458-29867582,29868460-29868577,29868665-29868757,
29868980-29869117,29869193-29869320,29869417-29869577,
29869683-29869773,29869858-29869914,29870654-29870777
Length = 344
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +1
Query: 175 DISFFLSPYAFSPAIFVIAIGVIMLFVSLFGCXGALKE 288
+I+ F++ Y F+PA+ V +G + + VS F LKE
Sbjct: 65 EIANFVA-YTFAPAVLVTPLGALSIIVSSFLAHFVLKE 101
>06_03_0963 + 26368959-26369462,26370900-26371205
Length = 269
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +1
Query: 223 VIAIGVIMLFVSLFGCXGALKESTC 297
V+A+GV++L +SL G GAL ++C
Sbjct: 47 VVALGVLLLALSLAGLAGALCGASC 71
>03_06_0483 -
34226496-34226864,34227140-34227360,34227677-34227933,
34228388-34228483,34228660-34228805,34229774-34229977
Length = 430
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +1
Query: 133 LTISVGTTIYAIYHDISFFLSPYAFSPAIFVIAIGVIMLFV 255
+TI G+ + ++ D + SPY+ AI IGV+ML+V
Sbjct: 371 ITIDDGSPVASMNFDEAELPSPYSCENAIRAAIIGVLMLWV 411
>03_02_0569 - 9528027-9529256,9530019-9530260,9530374-9531161,
9531613-9531953,9532090-9532310,9532392-9532702,
9532779-9533038,9533691-9533891,9533992-9534167,
9534242-9534296,9535739-9536146
Length = 1410
Score = 28.3 bits (60), Expect = 6.4
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +1
Query: 91 MLLCITAIFVLTSALTISVGTTIYAIYHDISFFL-SPYAFSPAIFVIAIGVIMLF 252
+LL TAI V LTI+ G Y ++ SF L P+ +P I +I +F
Sbjct: 1081 LLLWYTAISVDKQRLTIATGLKEYILFSFASFALVEPFGLAPYILKRRKSLISVF 1135
>11_04_0305 -
16162063-16162096,16162282-16164365,16165283-16165351,
16168317-16169288,16169548-16169650,16170427-16170509
Length = 1114
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3
Query: 186 LPVAIRLLPGYLCHRDWRH 242
LP+AI++L G LC RD H
Sbjct: 437 LPLAIKVLGGLLCRRDRNH 455
>08_02_0825 -
21570628-21570715,21571436-21571812,21572364-21572755,
21573943-21574311,21574395-21574580,21574709-21574845,
21575030-21575089,21575206-21575277,21575399-21575542,
21575702-21575773,21575928-21576060,21576157-21576247
Length = 706
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -2
Query: 588 AARIGDREVGKANAGPSSGGVDRMPVHVAIDAAAVQLVLNEVKCIL 451
++R VG++ G GG R+P+ V A LVL V C L
Sbjct: 235 SSRAAAAAVGRSKGG---GGAARLPIGVGTSLGASALVLLAVSCFL 277
>07_01_0882 + 7342606-7342842,7343601-7344245,7344515-7344907
Length = 424
Score = 27.9 bits (59), Expect = 8.5
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +1
Query: 64 ELGXQCIKXMLLCITAIFVLTSALTISVGTTIYAIYHDISFFLSPYAFSPAIFVIAI 234
+LG +C + C+T I +L S SV I+ + S F SPA F+ AI
Sbjct: 103 DLGEKCFGTIGRCLTEILILVSQAGGSVAYLIFIGQNLHSVF--SQLMSPAAFIFAI 157
>01_05_0359 +
21350580-21350829,21350990-21351064,21351156-21351236,
21352633-21352830,21352930-21353019,21353096-21353253,
21353350-21353472,21354989-21355096,21355530-21355826
Length = 459
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +2
Query: 515 GMRSTPPLEGPALALPTSRSPIRAAPSPT*LSSVKRRLXSAIXSMPT 655
GM PP+ P +PTSRSP A + V + + I S T
Sbjct: 394 GMIFVPPIARPGANVPTSRSPATQATRVVNTNRVTTNIENQINSGTT 440
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,750,006
Number of Sequences: 37544
Number of extensions: 390955
Number of successful extensions: 1164
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1163
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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