Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_N04
(718 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69790-4|CAA93655.1| 282|Caenorhabditis elegans Hypothetical pr... 56 2e-08
Z81128-2|CAB03397.2| 232|Caenorhabditis elegans Hypothetical pr... 55 6e-08
Z78415-6|CAH60758.1| 291|Caenorhabditis elegans Hypothetical pr... 48 9e-06
Z68880-6|CAA93092.1| 308|Caenorhabditis elegans Hypothetical pr... 44 1e-04
Z67734-1|CAA91527.2| 279|Caenorhabditis elegans Hypothetical pr... 42 3e-04
AF039043-9|AAB94196.1| 427|Caenorhabditis elegans Tetraspanin f... 40 0.001
AF039043-8|AAL02514.1| 451|Caenorhabditis elegans Tetraspanin f... 40 0.001
U67950-3|AAK84565.1| 138|Caenorhabditis elegans Hypothetical pr... 32 0.36
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t... 32 0.36
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t... 32 0.36
AF045640-7|AAU05589.1| 978|Caenorhabditis elegans Novel channel... 32 0.36
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel... 32 0.36
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel... 32 0.36
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel... 32 0.36
Z81484-7|CAE11296.1| 221|Caenorhabditis elegans Hypothetical pr... 31 1.1
U88167-7|AAB42229.1| 378|Caenorhabditis elegans Hypothetical pr... 29 3.3
AL161712-18|CAC70140.1| 448|Caenorhabditis elegans Hypothetical... 29 3.3
AC024824-3|AAK85501.1| 543|Caenorhabditis elegans Hypothetical ... 28 5.8
Z49125-4|CAA88936.1| 644|Caenorhabditis elegans Hypothetical pr... 28 7.7
U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel t... 28 7.7
DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-t... 28 7.7
AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-t... 28 7.7
>Z69790-4|CAA93655.1| 282|Caenorhabditis elegans Hypothetical
protein F33C8.3 protein.
Length = 282
Score = 56.4 bits (130), Expect = 2e-08
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 1/100 (1%)
Frame = +1
Query: 220 FVIAIGVIMLFVSLFGCXGALKESTCXXXXXXXXXXXXXXXXXXXXXTAYSLRSEVSQFL 399
F++ G I++ V FGC GA K + C T + + + ++
Sbjct: 59 FLVGAGAIIILVGYFGCIGAWKMNQCALAFFCCILILAFFLELAAAVTLFHKQEHIKHYV 118
Query: 400 DKKLREXLPLYYQHAEA-QDAFDFIQYELNCCGVDSYMDW 516
+ + + + Y A +DAFD +Q + CCGV +Y DW
Sbjct: 119 ESSMYDTIRNRYSSETAFKDAFDTVQEKFECCGVKTYTDW 158
>Z81128-2|CAB03397.2| 232|Caenorhabditis elegans Hypothetical
protein T23D8.2 protein.
Length = 232
Score = 54.8 bits (126), Expect = 6e-08
Identities = 42/215 (19%), Positives = 80/215 (37%)
Frame = +1
Query: 64 ELGXQCIKXMLLCITAIFVLTSALTISVGTTIYAIYHDISFFLSPYAFSPAIFVIAIGVI 243
E G +K +L + + I VG+ + + ++ L + I ++ IG +
Sbjct: 3 EGGVTIVKYLLFLANLVLWVGGLSLIIVGSILQLKFDNVLDILGDERLATPILLLVIGSL 62
Query: 244 MLFVSLFGCXGALKESTCXXXXXXXXXXXXXXXXXXXXXTAYSLRSEVSQFLDKKLREXL 423
+ GC GA++E+ C Y+L + +L+ +
Sbjct: 63 CTLLGFLGCCGAIRENYCLTVSFAVLLALLITCEIAAVIIGYALHDSFRLGIGNQLQTGM 122
Query: 424 PLYYQHAEAQDAFDFIQYELNCCGVDSYMDWHAVDPPTGGTGISFANLTVPDSCCAQSHM 603
Y++ + A+D CCGV + DW ++F T+PDSCC +
Sbjct: 123 VRYHESRGVESAWDKTHQLFECCGVTNSSDW-----------LTFT--TIPDSCCIEEIE 169
Query: 604 TVVGEETIVXCHXIYANGCLPRVYYLVNQSAGLLG 708
E ++ GC+ V V ++ ++G
Sbjct: 170 GCARENA-----PLFEPGCIHSVEQWVLKNGAMVG 199
>Z78415-6|CAH60758.1| 291|Caenorhabditis elegans Hypothetical
protein C17G1.8 protein.
Length = 291
Score = 47.6 bits (108), Expect = 9e-06
Identities = 29/76 (38%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Frame = +1
Query: 460 FDFIQYELNCCGVDSYMDWH-AVDPPTGGTGISFANLTVPDSCCAQSHMTVV-GEETIVX 633
+D +Q EL CCGVD+Y DWH +V P NL PDSCC H G E
Sbjct: 137 WDHLQRELQCCGVDNYTDWHYSVHWPN--------NLYTPDSCCDPQHFDAENGTENCGK 188
Query: 634 C----HXIYANGCLPR 669
+Y GC P+
Sbjct: 189 LPDEQSLLYQKGCFPK 204
>Z68880-6|CAA93092.1| 308|Caenorhabditis elegans Hypothetical
protein T14G10.6 protein.
Length = 308
Score = 44.0 bits (99), Expect = 1e-04
Identities = 45/232 (19%), Positives = 80/232 (34%), Gaps = 27/232 (11%)
Frame = +1
Query: 79 CIKXMLLCITAIFVLTSALTISVGTTIYAIYHDISFFLSPYA---FSPAIFVIAIGVIML 249
C+K + IF L + G + LS + P ++ +G +
Sbjct: 37 CVKYSVFSFNVIFFLLGFGLLLFGVWAQIEKNTFVNMLSKASKLYLDPTWPLLIVGFLTF 96
Query: 250 FVSLFGCXGALKESTCXXXXXXXXXXXXXXXXXXXXXTAYSLRSEVSQFLDKKLREXLPL 429
+ GC G+L+E+T AY+ R ++ ++ L + +
Sbjct: 97 IIGFSGCVGSLRENTSFLTFYSTLLGLLLIAEFSAGVFAYACRDQLDNYIRNLLNDVVVG 156
Query: 430 YYQHAEAQDAFDFIQYELNCCGVDSYMDW-----------HAVDPPTGGTG----ISFAN 564
Y + Q D +Q CCG++ DW P GG I+ +
Sbjct: 157 YRDDPDLQLLIDSMQETWMCCGINGADDWDRNTYFSIEAREVASPEAGGVPFSCCINSSK 216
Query: 565 LTVPDSCCA-------QSHMT--VVGEETIVXCHXIYANGCLPRVYYLVNQS 693
L + C +SHM + + + IY GCLP++ +N +
Sbjct: 217 LEFKNYFCGHGVRLKPESHMAAHLAAQRVMAHTASIYTEGCLPKLQLWLNNN 268
>Z67734-1|CAA91527.2| 279|Caenorhabditis elegans Hypothetical
protein B0198.1 protein.
Length = 279
Score = 42.3 bits (95), Expect = 3e-04
Identities = 43/221 (19%), Positives = 82/221 (37%), Gaps = 8/221 (3%)
Frame = +1
Query: 28 IHQYVAKMPQQKELGX--QCIKXMLLCITAIFVLTSALTISVGTTIYAIYHDISFFLSPY 201
+HQ+ P+ + G C L I+ + V+ L +++ +Y D+ + +
Sbjct: 4 VHQHRDHPPRNRRSGSCSGCCSKCQLFISYLLVIVGILFLALAIWLYIFRGDLIPLIQSH 63
Query: 202 AFSPAIFVIAIGVIMLFVSLFGCXGALKESTCXXXXXXXXXXXXXXXXXXXXXTAYSLRS 381
+ I+ +A+G + V + + + C +S +
Sbjct: 64 FYVKCIY-LAVGCGVFNVIIGFLVHSAVSNRCALVFYLLMLIFSMIMEGCLIYFTFSYHA 122
Query: 382 EVSQFLDKKL-REXLPLYYQHAEAQDAFDFIQYELNCCGVDSYMDWHAVDP-----PTGG 543
Q L+ L + L Y A +++Q + CCG +++ DW + P
Sbjct: 123 TYEQELNASLPNDILNNYNLDPNIAKAVNYLQRDSKCCGSNAFNDWPKPEVEDHYLPYAK 182
Query: 544 TGISFANLTVPDSCCAQSHMTVVGEETIVXCHXIYANGCLP 666
T + +PDSCC +H G + I+ GCLP
Sbjct: 183 TVVQRVQY-IPDSCCKSTHQR-KGCALSDSPNNIFYRGCLP 221
>AF039043-9|AAB94196.1| 427|Caenorhabditis elegans Tetraspanin
family protein 14,isoform a protein.
Length = 427
Score = 40.3 bits (90), Expect = 0.001
Identities = 40/182 (21%), Positives = 70/182 (38%), Gaps = 9/182 (4%)
Frame = +1
Query: 79 CIKXMLLCITAIFVLTSALTISVGTTIYAIYHDI-SFFLSPYAFSPAIFVIAIGVIMLFV 255
C+K ++ + +I L +++G +Y D L +PAI + G + V
Sbjct: 29 CLKWLVFLLNSIVFLVGVGILALG--VYLFIKDFREVKLVDIILNPAILISIFGFSICVV 86
Query: 256 SLFGCXGALKESTCXXXXXXXXXXXXXXXXXXXXXTAYSL-RSEVSQFLDKK--LREXLP 426
S FG GAL+++ ++L ++ ++ L L +
Sbjct: 87 SFFGFMGALRDNIFLLKCFAACVFLSYILVVAVTLVFFTLFYTDTTEGLSANWLLLYAVK 146
Query: 427 LYYQHAEAQDAFDFIQYELNCCGVDS----YMDWH-AVDPPTGGTGISFANLTVPDSCCA 591
Y+ + + D +Q L CCGV S Y DW+ + + VP SCC
Sbjct: 147 NYHTNRNLAEIMDALQENLECCGVSSIAQGYRDWNMSYQFNCTNSNPQPEKCGVPFSCCR 206
Query: 592 QS 597
+S
Sbjct: 207 KS 208
>AF039043-8|AAL02514.1| 451|Caenorhabditis elegans Tetraspanin
family protein 14,isoform b protein.
Length = 451
Score = 40.3 bits (90), Expect = 0.001
Identities = 40/182 (21%), Positives = 70/182 (38%), Gaps = 9/182 (4%)
Frame = +1
Query: 79 CIKXMLLCITAIFVLTSALTISVGTTIYAIYHDI-SFFLSPYAFSPAIFVIAIGVIMLFV 255
C+K ++ + +I L +++G +Y D L +PAI + G + V
Sbjct: 53 CLKWLVFLLNSIVFLVGVGILALG--VYLFIKDFREVKLVDIILNPAILISIFGFSICVV 110
Query: 256 SLFGCXGALKESTCXXXXXXXXXXXXXXXXXXXXXTAYSL-RSEVSQFLDKK--LREXLP 426
S FG GAL+++ ++L ++ ++ L L +
Sbjct: 111 SFFGFMGALRDNIFLLKCFAACVFLSYILVVAVTLVFFTLFYTDTTEGLSANWLLLYAVK 170
Query: 427 LYYQHAEAQDAFDFIQYELNCCGVDS----YMDWH-AVDPPTGGTGISFANLTVPDSCCA 591
Y+ + + D +Q L CCGV S Y DW+ + + VP SCC
Sbjct: 171 NYHTNRNLAEIMDALQENLECCGVSSIAQGYRDWNMSYQFNCTNSNPQPEKCGVPFSCCR 230
Query: 592 QS 597
+S
Sbjct: 231 KS 232
>U67950-3|AAK84565.1| 138|Caenorhabditis elegans Hypothetical
protein T01B6.4 protein.
Length = 138
Score = 32.3 bits (70), Expect = 0.36
Identities = 17/35 (48%), Positives = 18/35 (51%)
Frame = -2
Query: 600 VGLGAARIGDREVGKANAGPSSGGVDRMPVHVAID 496
VG RIG R VG N PSS V +PV V D
Sbjct: 100 VGRYGFRIGKRFVGDQNDSPSSSAVQMLPVQVMYD 134
>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1797
Score = 32.3 bits (70), Expect = 0.36
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 508 MDWHAVDPPTGGTGISFANLTVPDSCCA 591
MD+H V P T ++ +L +PD+ CA
Sbjct: 221 MDYHCVQPKTDPNNVTIMDLAIPDTMCA 248
>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1831
Score = 32.3 bits (70), Expect = 0.36
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 508 MDWHAVDPPTGGTGISFANLTVPDSCCA 591
MD+H V P T ++ +L +PD+ CA
Sbjct: 221 MDYHCVQPKTDPNNVTIMDLAIPDTMCA 248
>AF045640-7|AAU05589.1| 978|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
b protein.
Length = 978
Score = 32.3 bits (70), Expect = 0.36
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 508 MDWHAVDPPTGGTGISFANLTVPDSCCA 591
MD+H V P T ++ +L +PD+ CA
Sbjct: 279 MDYHCVQPKTDPNNVTIMDLAIPDTMCA 306
>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
a protein.
Length = 1562
Score = 32.3 bits (70), Expect = 0.36
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 508 MDWHAVDPPTGGTGISFANLTVPDSCCA 591
MD+H V P T ++ +L +PD+ CA
Sbjct: 279 MDYHCVQPKTDPNNVTIMDLAIPDTMCA 306
>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
c protein.
Length = 1913
Score = 32.3 bits (70), Expect = 0.36
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 508 MDWHAVDPPTGGTGISFANLTVPDSCCA 591
MD+H V P T ++ +L +PD+ CA
Sbjct: 279 MDYHCVQPKTDPNNVTIMDLAIPDTMCA 306
>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
d protein.
Length = 1861
Score = 32.3 bits (70), Expect = 0.36
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 508 MDWHAVDPPTGGTGISFANLTVPDSCCA 591
MD+H V P T ++ +L +PD+ CA
Sbjct: 251 MDYHCVQPKTDPNNVTIMDLAIPDTMCA 278
>Z81484-7|CAE11296.1| 221|Caenorhabditis elegans Hypothetical
protein C47A10.7 protein.
Length = 221
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = +1
Query: 178 ISFFLSPYAFSPAIFVIAIGVIMLFVSLFGC 270
+S SPY +S +FVIA VI L V LFGC
Sbjct: 3 LSALSSPYIYSNVLFVIA--VISLPVHLFGC 31
>U88167-7|AAB42229.1| 378|Caenorhabditis elegans Hypothetical
protein D2092.2 protein.
Length = 378
Score = 29.1 bits (62), Expect = 3.3
Identities = 21/50 (42%), Positives = 25/50 (50%)
Frame = +2
Query: 524 STPPLEGPALALPTSRSPIRAAPSPT*LSSVKRRLXSAIXSMPTVACPES 673
ST + P+ LPT+RSPI +PS SS K A S P A P S
Sbjct: 280 STASPDPPSFVLPTARSPINTSPS----SSPKASSPKA--SSPKAASPVS 323
>AL161712-18|CAC70140.1| 448|Caenorhabditis elegans Hypothetical
protein Y66D12A.23 protein.
Length = 448
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +1
Query: 490 CGVDSYMDWHAV-DPPTGGTGISFANL 567
CG+D Y++ PPTGG GI F +
Sbjct: 367 CGIDWYLEMRRRGQPPTGGFGIGFERM 393
>AC024824-3|AAK85501.1| 543|Caenorhabditis elegans Hypothetical
protein Y55B1BR.1 protein.
Length = 543
Score = 28.3 bits (60), Expect = 5.8
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = -3
Query: 620 SSPTTVMWDWAQHESGTVRLAKLMPVPPVGGSTACQS-M*LSTPQQF-NSY*MKSNASCA 447
+SP++ W+W + E + L P V +T+ +S L TP+ N + N SC+
Sbjct: 27 TSPSSDRWNWMEDEKSSYESLSLTPFSSVSPNTSKKSATGLETPKSAGNLHSQDRNLSCS 86
>Z49125-4|CAA88936.1| 644|Caenorhabditis elegans Hypothetical
protein C47G2.4 protein.
Length = 644
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 139 ISVGTTIYAIYHDISFFLSPYAFSPAIFV 225
++V T + ++ + +FF+ Y SPA FV
Sbjct: 372 VTVFMTFFVLFSECTFFVVSYTLSPAAFV 400
>U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 2 protein.
Length = 1785
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +1
Query: 460 FDFIQYELNCCGVDSY--MDWHAVDPPTGGTGISFANLTVPDSCCAQ 594
F F + GV + +++H V T ++ A+L +PD+ C+Q
Sbjct: 227 FMFFVFSYAIMGVQLFGRLNYHCVVNGTDPNNVTIADLAIPDTMCSQ 273
>DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1763
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +1
Query: 460 FDFIQYELNCCGVDSY--MDWHAVDPPTGGTGISFANLTVPDSCCAQ 594
F F + GV + +++H V T ++ A+L +PD+ C+Q
Sbjct: 205 FMFFVFSYAIMGVQLFGRLNYHCVVNGTDPNNVTIADLAIPDTMCSQ 251
>AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1785
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +1
Query: 460 FDFIQYELNCCGVDSY--MDWHAVDPPTGGTGISFANLTVPDSCCAQ 594
F F + GV + +++H V T ++ A+L +PD+ C+Q
Sbjct: 227 FMFFVFSYAIMGVQLFGRLNYHCVVNGTDPNNVTIADLAIPDTMCSQ 273
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,969,996
Number of Sequences: 27780
Number of extensions: 292404
Number of successful extensions: 829
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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