Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_N03
         (581 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P19351 Cluster: Troponin T, skeletal muscle; n=46; Panc...   119   4e-26
UniRef50_UPI0000D555FF Cluster: PREDICTED: similar to CG7107-PG,...   115   7e-25

>UniRef50_P19351 Cluster: Troponin T, skeletal muscle; n=46;
           Pancrustacea|Rep: Troponin T, skeletal muscle -
           Drosophila melanogaster (Fruit fly)
          Length = 397

 Score =  119 bits (287), Expect = 4e-26
 Identities = 66/131 (50%), Positives = 72/131 (54%)
 Frame = +1

Query: 184 TKPAPKQESRPSIAGEGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRAXXXXXXXXXXXX 363
           T+   K    P+  GEGDPEFIKRQDQKRSDLD+QLKEYI EWRKQR+            
Sbjct: 19  TREETKPPQTPA-EGEGDPEFIKRQDQKRSDLDDQLKEYITEWRKQRSKEEDELKKLKEK 77

Query: 364 QAKRKVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIEXKRQRLEEAXXXRQAMLQAMK 543
           QAKRKV+                             +IE KR RLEEA   RQAMLQAMK
Sbjct: 78  QAKRKVTRAEEEQKMAQRKKEEEERRVREAEEKKQREIEEKRMRLEEAEKKRQAMLQAMK 137

Query: 544 DAXKTGPNFTI 576
           D  K GPNFTI
Sbjct: 138 DKDKKGPNFTI 148


>UniRef50_UPI0000D555FF Cluster: PREDICTED: similar to CG7107-PG,
           isoform G isoform 3; n=1; Tribolium castaneum|Rep:
           PREDICTED: similar to CG7107-PG, isoform G isoform 3 -
           Tribolium castaneum
          Length = 352

 Score =  115 bits (277), Expect = 7e-25
 Identities = 63/118 (53%), Positives = 67/118 (56%), Gaps = 1/118 (0%)
 Frame = +1

Query: 226 GEGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRAXXXXXXXXXXXXQAKRKVSXXXXXXX 405
           G GDPEFIKRQDQKRSDLDEQL+EYI EWRKQRA            QAKRK+S       
Sbjct: 33  GAGDPEFIKRQDQKRSDLDEQLREYITEWRKQRAKEEDELKKLKEKQAKRKISRAEEERK 92

Query: 406 XXXXXXXXXXXXXXXXXXXXXXDIEXKRQRLEEAXXXRQAMLQAMKDAXKT-GPNFTI 576
                                 DIE KRQRLEEA   RQAM+QA+KD  K  GPNFTI
Sbjct: 93  MAERKKQEEERRIREIEEKKQRDIEEKRQRLEEAEKKRQAMMQALKDQNKNKGPNFTI 150


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 404,849,686
Number of Sequences: 1657284
Number of extensions: 5707213
Number of successful extensions: 18086
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18064
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 40404161459
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)