Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_N03
         (581 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo...    27   1.5  
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|...    27   2.0  
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom...    25   8.1  

>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
           Tip1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 242 SGSPSPAIDGLLSCLGAGF 186
           S SPSP IDG  + +G GF
Sbjct: 80  SSSPSPKIDGTAASIGMGF 98


>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 196 PK-QESRPSIAGEGDPEFIKRQDQKRSDLDEQLKEYI 303
           PK Q  RP I+ +   E  K  D+K++  +E+++E I
Sbjct: 143 PKSQRKRPKISFDSVAELAKESDEKQNAYEEKIEERI 179


>SPAC6F6.12 |||autophagy associated protein
           Atg24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +1

Query: 241 EFIKRQDQKRSDLDEQLKEY 300
           E +KR+DQK+ D+ E L+EY
Sbjct: 272 ELLKRRDQKQQDV-EALQEY 290


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,542,243
Number of Sequences: 5004
Number of extensions: 20336
Number of successful extensions: 70
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)