Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_N03
         (581 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0531 + 23707978-23709021                                         30   1.2  
02_04_0553 - 23808328-23809530                                         29   3.6  
02_04_0533 + 23719353-23719910,23720012-23720418,23720690-23721023     29   3.6  
09_04_0161 - 15232074-15232139,15232299-15232406,15233417-152335...    28   4.7  
02_04_0534 + 23725051-23726253                                         27   8.2  

>02_04_0531 + 23707978-23709021
          Length = 347

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +3

Query: 3  PPRSPRTPHSNVAVLPV 53
          PP SPRTPH+ V  LPV
Sbjct: 36 PPDSPRTPHTYVGFLPV 52


>02_04_0553 - 23808328-23809530
          Length = 400

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +3

Query: 3   PPRSPRTPHSNVAVLPV 53
           PP SPRTPH+  ++LPV
Sbjct: 72  PPDSPRTPHTYGSLLPV 88


>02_04_0533 + 23719353-23719910,23720012-23720418,23720690-23721023
          Length = 432

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +3

Query: 3   PPRSPRTPHSNVAVLPV 53
           PP SPRTPH+  ++LPV
Sbjct: 72  PPDSPRTPHTYGSLLPV 88


>09_04_0161 -
           15232074-15232139,15232299-15232406,15233417-15233506,
           15233617-15233733,15234408-15234527,15234930-15236168
          Length = 579

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +2

Query: 212 DRRSRVREIQNSSSVKTRSGRTWMNS*RNTSTNGANSGPRRRMSSNALKRSRPSARFLVP 391
           D  SR +   ++ S  T + R    S   TS N     P+R  S++  + S PS+R   P
Sbjct: 38  DVASRYKNGLSAHSAATTARRCTSPSPGRTSANECTPEPKRAQSADRRRPSTPSSRVSTP 97


>02_04_0534 + 23725051-23726253
          Length = 400

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 3   PPRSPRTPHSNVAVLPV 53
           PP SPRTPH+  + LP+
Sbjct: 73  PPDSPRTPHTYGSFLPI 89


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,428,996
Number of Sequences: 37544
Number of extensions: 173689
Number of successful extensions: 507
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)