Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_N03
         (581 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70851-7|AAB09130.3|  640|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z99281-6|CAB54458.2|  625|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z99281-5|CAB54457.1|  553|Caenorhabditis elegans Hypothetical pr...    27   7.4  
AL032652-6|CAA21710.2|  752|Caenorhabditis elegans Hypothetical ...    27   9.7  

>U70851-7|AAB09130.3|  640|Caenorhabditis elegans Hypothetical
           protein M02B7.5 protein.
          Length = 640

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 251 SVKTRSGRTWMNS*RNTSTNGANSGPRRRMSSNAL 355
           S+K  +G        N+STNG N+   RR+S N+L
Sbjct: 594 SMKLSNGSNSSAGSSNSSTNGVNNSSFRRLSFNSL 628


>Z99281-6|CAB54458.2|  625|Caenorhabditis elegans Hypothetical
           protein Y57G11C.9b protein.
          Length = 625

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 20/54 (37%), Positives = 25/54 (46%)
 Frame = +2

Query: 218 RSRVREIQNSSSVKTRSGRTWMNS*RNTSTNGANSGPRRRMSSNALKRSRPSAR 379
           RSR R +  S S  +R+GR         S + + S  R R  SN   RSR S R
Sbjct: 185 RSRSRSVSRSKSPASRNGR--------VSRHRSRSQNRSRSRSNTRSRSRSSGR 230


>Z99281-5|CAB54457.1|  553|Caenorhabditis elegans Hypothetical
           protein Y57G11C.9a protein.
          Length = 553

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 20/54 (37%), Positives = 25/54 (46%)
 Frame = +2

Query: 218 RSRVREIQNSSSVKTRSGRTWMNS*RNTSTNGANSGPRRRMSSNALKRSRPSAR 379
           RSR R +  S S  +R+GR         S + + S  R R  SN   RSR S R
Sbjct: 185 RSRSRSVSRSKSPASRNGR--------VSRHRSRSQNRSRSRSNTRSRSRSSGR 230


>AL032652-6|CAA21710.2|  752|Caenorhabditis elegans Hypothetical
           protein Y63D3A.6b protein.
          Length = 752

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 187 KPAPKQESRPSIAGEGDPEFIKRQDQKRSDLDEQLKEYINE 309
           K  PKQ+ + +  G+G  +F+K+      D ++ LKE   E
Sbjct: 526 KNKPKQKKKKA-QGQGQKKFVKKNAPASPDTEKALKEEAKE 565


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,840,848
Number of Sequences: 27780
Number of extensions: 123867
Number of successful extensions: 438
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)