Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_N02
         (336 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa...   101   2e-23
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac...   101   2e-23
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    25   2.3  
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    24   7.1  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    23   9.4  

>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
           L19B|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 193

 Score =  101 bits (243), Expect = 2e-23
 Identities = 46/96 (47%), Positives = 61/96 (63%)
 Frame = +2

Query: 41  KPVAVHSRARVRKNTEXRRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTA 220
           KP  +HSR R+RK    +R GRH G+GKR+GTA ARMP   +W                +
Sbjct: 53  KPNLMHSRFRIRKTHAAKRLGRHTGYGKRKGTAEARMPSTVVWMRRQRVLRRLLRKYRES 112

Query: 221 KKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKXAD 328
            KID+HLYH+LY++AKGN FK+KR L+E+I R  A+
Sbjct: 113 GKIDKHLYHTLYLEAKGNTFKHKRALIEHIQRAKAE 148



 Score = 27.5 bits (58), Expect = 0.58
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = +1

Query: 1  NIRKMIKDGLVIXK 42
          NIRK++KDGLVI K
Sbjct: 40 NIRKLVKDGLVIRK 53


>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
           L19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 193

 Score =  101 bits (243), Expect = 2e-23
 Identities = 46/96 (47%), Positives = 61/96 (63%)
 Frame = +2

Query: 41  KPVAVHSRARVRKNTEXRRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTA 220
           KP  +HSR R+RK    +R GRH G+GKR+GTA ARMP   +W                +
Sbjct: 53  KPNLMHSRFRIRKTHAAKRLGRHTGYGKRKGTAEARMPSAVVWMRRQRVLRRLLRKYRES 112

Query: 221 KKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKXAD 328
            KID+HLYH+LY++AKGN FK+KR L+E+I R  A+
Sbjct: 113 GKIDKHLYHTLYLEAKGNTFKHKRALIEHIQRAKAE 148



 Score = 27.5 bits (58), Expect = 0.58
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = +1

Query: 1  NIRKMIKDGLVIXK 42
          N+RK+IKDGLVI K
Sbjct: 40 NVRKLIKDGLVIRK 53


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 63  ALVSAKTQXHVERVVTVALVREEVQPMRVCHRR 161
           ++V  K     E+++  AL RE V+P R  H++
Sbjct: 652 SVVEVKDAKAAEKILRYALFREVVKPKRKKHKK 684


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -2

Query: 140 WLYLFSYQSHSDDPFYVXLCFCGHERGS 57
           W     Y+S   D FY  + F  H RGS
Sbjct: 824 WGETMVYESIISDDFYSMIRFLVHHRGS 851


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 230 DRHLYHSLYMKAKGNVFKN 286
           +R +Y SLY KAK  V  N
Sbjct: 775 ERKIYDSLYTKAKSTVNAN 793


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,342,991
Number of Sequences: 5004
Number of extensions: 23481
Number of successful extensions: 47
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)