Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_N02
(336 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0125 - 21039767-21039791,21039876-21039922,21040220-210405... 118 9e-28
03_02_0934 - 12513810-12513834,12513918-12513970,12514212-125145... 118 9e-28
02_05_0067 + 25557975-25558553 27 2.9
09_04_0254 + 16131779-16132475,16132609-16132768,16132944-161329... 27 5.0
02_04_0131 - 20046033-20046505,20047140-20047233,20047343-200474... 27 5.0
11_03_0085 - 9717360-9717390,9717478-9717603,9718600-9718666,971... 26 6.6
01_06_1768 + 39771025-39771241,39771284-39771513,39772165-397722... 26 6.6
05_01_0038 + 260080-260380,260852-261022,261764-261810,262266-26... 26 8.7
>03_05_0125 -
21039767-21039791,21039876-21039922,21040220-21040533,
21040613-21040735,21041599-21041710
Length = 206
Score = 118 bits (285), Expect = 9e-28
Identities = 53/98 (54%), Positives = 66/98 (67%)
Frame = +2
Query: 41 KPVAVHSRARVRKNTEXRRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTA 220
KP +HSR+R R+ E ++KGRH G+GKRRGT AR+P K LW A
Sbjct: 53 KPQKIHSRSRARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYREA 112
Query: 221 KKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKXADKA 334
KKID+H+YH +YMK KGN+FKNKRVLME IH+ A+KA
Sbjct: 113 KKIDKHMYHDMYMKVKGNMFKNKRVLMESIHKSKAEKA 150
>03_02_0934 -
12513810-12513834,12513918-12513970,12514212-12514525,
12514608-12514730,12515710-12515821
Length = 208
Score = 118 bits (285), Expect = 9e-28
Identities = 53/98 (54%), Positives = 66/98 (67%)
Frame = +2
Query: 41 KPVAVHSRARVRKNTEXRRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTA 220
KP +HSR+R R+ E ++KGRH G+GKRRGT AR+P K LW A
Sbjct: 53 KPQKIHSRSRARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYREA 112
Query: 221 KKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKXADKA 334
KKID+H+YH +YMK KGN+FKNKRVLME IH+ A+KA
Sbjct: 113 KKIDKHMYHDMYMKVKGNMFKNKRVLMESIHKSKAEKA 150
>02_05_0067 + 25557975-25558553
Length = 192
Score = 27.5 bits (58), Expect = 2.9
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -2
Query: 293 HACS*THYPSPSCRVSGIDACQSSW 219
H C H P CR + +DA Q+ W
Sbjct: 148 HGCDKEHAYQPPCRPNVVDASQAVW 172
>09_04_0254 +
16131779-16132475,16132609-16132768,16132944-16132992,
16133158-16133271,16133434-16133958,16135538-16135969,
16138882-16138956,16139530-16139625,16140610-16140725,
16140822-16140992,16141080-16141239,16141328-16141513,
16141624-16141752,16141837-16141915,16142034-16142143
Length = 1032
Score = 26.6 bits (56), Expect = 5.0
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 65 ARVRKNTEXRRKGRHCGFGKRRGTANARMPQKELW 169
AR + + +++GR G+G R+ A R+ +E W
Sbjct: 396 ARGGQQQQQQQEGRRGGWGVRKAAARVRVAAEENW 430
>02_04_0131 -
20046033-20046505,20047140-20047233,20047343-20047434,
20047560-20047611,20047721-20047878,20048190-20048280,
20048397-20049455
Length = 672
Score = 26.6 bits (56), Expect = 5.0
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = +3
Query: 135 QPMRVCHRRNYGYKDKGFLENCS*STELPRRLTGIYTT 248
+PM V RR+ K GFLE T P+ L I TT
Sbjct: 49 EPMSVRERRHRFLKGMGFLEPGPTGTAFPQWLAEIATT 86
>11_03_0085 -
9717360-9717390,9717478-9717603,9718600-9718666,
9718770-9718831,9718904-9719094,9720133-9720268,
9720760-9720851,9721231-9721413
Length = 295
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -2
Query: 323 PSSCGCTP*AHACS*THYPSPSCRVSGIDA 234
PS C P ACS + PS S RV+ + A
Sbjct: 20 PSPCAALPGNAACSSSPSPSTSIRVNAMSA 49
>01_06_1768 +
39771025-39771241,39771284-39771513,39772165-39772245,
39772468-39772824,39772942-39773046
Length = 329
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -1
Query: 234 LSIFLAVLYFRSNFLRT 184
+++FLAVLYF FLRT
Sbjct: 311 IALFLAVLYFIVQFLRT 327
>05_01_0038 +
260080-260380,260852-261022,261764-261810,262266-262412,
262495-262569,262826-262935,263032-263159,263368-263429,
263599-263748,263827-263861,264083-264151,264538-264629,
264718-264794,265434-265532
Length = 520
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 232 VNLLGSSVLQEQFSKNPLSLYP*FLLW 152
V LLGS+ + E S + L+L+P LW
Sbjct: 323 VLLLGSNQIDEVLSVDSLNLFPSLTLW 349
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,998,958
Number of Sequences: 37544
Number of extensions: 160559
Number of successful extensions: 396
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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