Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_N02
(336 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.) 138 1e-33
SB_26423| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.94
SB_648| Best HMM Match : SHQ1 (HMM E-Value=2) 27 3.8
SB_35269| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_31152| Best HMM Match : DUF112 (HMM E-Value=4.3) 27 5.0
SB_37049| Best HMM Match : Acylphosphatase (HMM E-Value=0.82) 27 5.0
SB_40645| Best HMM Match : zf-C2H2 (HMM E-Value=3.30006e-42) 26 8.7
SB_57068| Best HMM Match : NAD4L (HMM E-Value=9.4) 26 8.7
SB_47097| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.7
SB_24571| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.7
>SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 224
Score = 138 bits (334), Expect = 1e-33
Identities = 65/98 (66%), Positives = 71/98 (72%)
Frame = +2
Query: 41 KPVAVHSRARVRKNTEXRRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTA 220
KP VHSRARVRK E R KGRH G GKR+GTANARMPQK +W A
Sbjct: 81 KPEIVHSRARVRKADEARSKGRHSGHGKRKGTANARMPQKTIWIRRMRVLRRLLRKYREA 140
Query: 221 KKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKXADKA 334
KKID H+YHSLYMK+KGNVFKNKRVLMEYIH+K A+KA
Sbjct: 141 KKIDNHMYHSLYMKSKGNVFKNKRVLMEYIHKKKAEKA 178
Score = 27.1 bits (57), Expect = 3.8
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = +1
Query: 1 NIRKMIKDGLVIXK 42
N+RK+IKDGL+I K
Sbjct: 68 NVRKLIKDGLIIKK 81
>SB_26423| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 29.1 bits (62), Expect = 0.94
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 62 RARVRKNTEXRRKGRHCGFGKRRGTANAR 148
+A RK RR+ R G K+R TANAR
Sbjct: 17 KANSRKKRRRRRRPRLTGLSKQRQTANAR 45
>SB_648| Best HMM Match : SHQ1 (HMM E-Value=2)
Length = 327
Score = 27.1 bits (57), Expect = 3.8
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -2
Query: 86 LCFCGHERGSVLLQVXLMTRPSLIILRM 3
+CFCGH + + V L T S I+L +
Sbjct: 211 MCFCGHRLFKLCMDVFLHTSLSYILLNI 238
>SB_35269| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 172
Score = 26.6 bits (56), Expect = 5.0
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -2
Query: 140 WLYLFSYQSHSDDPFYVXLCFCGH 69
W + ++ H+DDPF V C H
Sbjct: 91 WRWAHNHSIHADDPFEVACPHCRH 114
>SB_31152| Best HMM Match : DUF112 (HMM E-Value=4.3)
Length = 400
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 157 LWHTRIGCTSSLTKATVTTLSTXFCVFADTSAGVY 53
L++TR+ C SSL VT S + V G+Y
Sbjct: 108 LYNTRVTCDSSLYNTRVTCDSRMYLVLLTVLPGLY 142
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 157 LWHTRIGCTSSLTKATVTTLSTXFCVFADTSAGVY 53
L++TR+ C S L A VT S + V G+Y
Sbjct: 346 LYNTRVTCDSRLYNARVTCDSRMYLVVLTVLLGLY 380
>SB_37049| Best HMM Match : Acylphosphatase (HMM E-Value=0.82)
Length = 646
Score = 26.6 bits (56), Expect = 5.0
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -2
Query: 140 WLYLFSYQSHSDDPFYVXLCFCGH 69
W + ++ H+DDPF V C H
Sbjct: 91 WRWAHNHSIHADDPFEVACPHCRH 114
>SB_40645| Best HMM Match : zf-C2H2 (HMM E-Value=3.30006e-42)
Length = 554
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 108 TVALVREEVQPMRVCHRRNYGY 173
T +L EE +P CH+ N GY
Sbjct: 402 TASLTAEESRPKHQCHQCNKGY 423
>SB_57068| Best HMM Match : NAD4L (HMM E-Value=9.4)
Length = 177
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 157 LWHTRIGCTSSLTKATVTTLSTXFCVFADTSAGVY 53
L++TR+ C S L A VT S + V G+Y
Sbjct: 68 LYNTRVTCGSRLYNARVTCDSRMYLVLLTVLQGLY 102
>SB_47097| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 323
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 3/23 (13%)
Frame = -2
Query: 143 HWLYLFSYQSHSD---DPFYVXL 84
++LYLF Y+ H D D FYV L
Sbjct: 94 YFLYLFFYEHHEDVLPDQFYVKL 116
>SB_24571| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 868
Score = 25.8 bits (54), Expect = 8.7
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = -1
Query: 270 PFAFM*SEWYRCLSIFLAVLYFRSNFLRTLCLCT 169
P AF S +C S LA+ Y R T CLCT
Sbjct: 295 PLAFPASRPGQCKSRLLAMEYRRRYSADTSCLCT 328
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,642,144
Number of Sequences: 59808
Number of extensions: 197987
Number of successful extensions: 550
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 473307974
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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