Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_N02
         (336 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal pro...   120   2e-28
Z92830-9|CAB07361.2|  461|Caenorhabditis elegans Hypothetical pr...    26   5.8  
U14524-1|AAA50785.1|  461|Caenorhabditis elegans avermectin-sens...    26   5.8  
AC024830-6|AAF59601.3|  603|Caenorhabditis elegans Hypothetical ...    26   5.8  
AC006777-5|AAK72311.1|  247|Caenorhabditis elegans Hypothetical ...    26   7.7  

>AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 19 protein.
          Length = 198

 Score =  120 bits (290), Expect = 2e-28
 Identities = 55/96 (57%), Positives = 66/96 (68%)
 Frame = +2

Query: 41  KPVAVHSRARVRKNTEXRRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTA 220
           KPV VHSR R R+  E RRKGRH G+GKRRGTANARMP+K LW                A
Sbjct: 53  KPVTVHSRFRAREYEEARRKGRHTGYGKRRGTANARMPEKTLWIRRMRVLRNLLRRYRDA 112

Query: 221 KKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKXAD 328
           KK+D+HLYH LY++AKGN FKNK+ L+EYI +K  +
Sbjct: 113 KKLDKHLYHELYLRAKGNNFKNKKNLIEYIFKKKTE 148


>Z92830-9|CAB07361.2|  461|Caenorhabditis elegans Hypothetical
           protein F11A5.10 protein.
          Length = 461

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 145 RIGCTSSLTKATVTTLSTXFCVFADTSAGVY-CYR 44
           ++G +SSL    +T  ST +C  + T+ G+Y C R
Sbjct: 232 KVGLSSSLPSFQLTNTSTTYCT-SVTNTGIYSCLR 265


>U14524-1|AAA50785.1|  461|Caenorhabditis elegans
           avermectin-sensitive glutamate-gated chloride channel
           GluCl alpha protein.
          Length = 461

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 145 RIGCTSSLTKATVTTLSTXFCVFADTSAGVY-CYR 44
           ++G +SSL    +T  ST +C  + T+ G+Y C R
Sbjct: 232 KVGLSSSLPSFQLTNTSTTYCT-SVTNTGIYSCLR 265


>AC024830-6|AAF59601.3|  603|Caenorhabditis elegans Hypothetical
           protein Y55F3BR.8a protein.
          Length = 603

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = -1

Query: 234 LSIFLAVLYFRSNF 193
           L++ LA++YFRSNF
Sbjct: 8   LAVILAIIYFRSNF 21


>AC006777-5|AAK72311.1|  247|Caenorhabditis elegans Hypothetical
           protein Y46H3D.8 protein.
          Length = 247

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = -2

Query: 323 PSSCG--CTP*AHACS*THYPSPSCRVSGIDACQSS-WQ 216
           P +CG  C   A++CS   YP  +C       C SS W+
Sbjct: 101 PKTCGFCCATSAYSCSNVAYPRLTCSSITAAQCASSVWR 139


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,585,425
Number of Sequences: 27780
Number of extensions: 138862
Number of successful extensions: 299
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)