Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_M24
(747 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyc... 31 0.13
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 31 0.17
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 28 1.6
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar... 28 1.6
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac... 28 1.6
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 27 2.1
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 27 3.8
SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 27 3.8
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 5.0
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 5.0
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ... 26 6.6
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|... 26 6.6
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy... 26 6.6
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 25 8.7
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc... 25 8.7
>SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 31.5 bits (68), Expect = 0.13
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 246 IVYERSFMLSLRQSPISQTPPQCALPAALLKNPSS 350
I+ E+S + +Q P S PP+ ALPA + PSS
Sbjct: 236 ILREQSKQIPTQQKPSSLPPPERALPAPTMPTPSS 270
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 31.1 bits (67), Expect = 0.17
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Frame = +3
Query: 273 SLRQSPISQT----PPQCALPAALLKNPSSVPNVQPASTQKPRSNSISF-DESQETF 428
SL SP+ T PP+ L LL PS + N+Q ++T+ SNSI + ++Q F
Sbjct: 35 SLLDSPLLSTNEHYPPKSTL---LLSGPSPIRNIQLSATKSSESNSIDYLTDTQNIF 88
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 27.9 bits (59), Expect = 1.6
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -3
Query: 391 DRGFCVL-AGCTLGTEDGFFSRAAGSAHCGG-VWEIGDCRRDNMNDL 257
D C++ AG + GF R +A C G VW I CR +++L
Sbjct: 429 DGPMCLIGAGVGIAPFRGFVQRRLANAACTGKVWIIQGCRDQKLDEL 475
>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 27.9 bits (59), Expect = 1.6
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = -3
Query: 349 EDGFFSRAAGSAHCGGVWE 293
ED F+++A+G+ + GG W+
Sbjct: 36 EDNFYAKASGNLYLGGTWK 54
>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
Vps23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 487
Score = 27.9 bits (59), Expect = 1.6
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = +3
Query: 258 RSFMLSLRQSPISQTPPQCALPAALLKNPSSVPNVQPASTQKPRSNSI 401
+S + SL +P S T Q + L+ PSS Q KP N I
Sbjct: 217 QSTLFSLNTAPFSATSQQLVHDSVSLRRPSSNIPAQKPIPPKPEQNEI 264
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 27.5 bits (58), Expect = 2.1
Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 2/105 (1%)
Frame = +3
Query: 93 IMSASPIARQATHSQSIPSRRVLITDPAQMPDVYSSTPGGTIYSTTPGGTRI--VYERSF 266
+ S+ PI + + S++ + PA P+ S P +I + P T + YE+
Sbjct: 276 VASSKPIKK--AWASVAKSKKKVTPAPAPAPESEPSKP--SIAPSQPSKTNVSAAYEKPA 331
Query: 267 MLSLRQSPISQTPPQCALPAALLKNPSSVPNVQPASTQKPRSNSI 401
LS P A PA + PS+ + ST N++
Sbjct: 332 ELSSSSVPFPHKSQDSATPANVETTPSTATSAPKKSTAPFAINAV 376
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 26.6 bits (56), Expect = 3.8
Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 7/116 (6%)
Frame = +3
Query: 75 TPRKFLIMSASPIARQATHSQSIPSRRVLI---TDPAQMPDVYSSTPGGTIYSTTPGGTR 245
TPRK L + SP HS+SI R P+ +P + GG + ++
Sbjct: 420 TPRKPLPTTTSPKVNPEPHSESISDTRPSTPRKVPPSTVPKMNPKLQGGNSVTAPSTPSK 479
Query: 246 IVYERSFMLSLR----QSPISQTPPQCALPAALLKNPSSVPNVQPASTQKPRSNSI 401
++ S ++ + +S + + P LPAA K + + AS P ++I
Sbjct: 480 VLPAMSPKVAPKFQGGRSSTAPSTPNKVLPAASAKAAPKLQE-KAASFDIPNKSTI 534
>SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 231
Score = 26.6 bits (56), Expect = 3.8
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +3
Query: 273 SLRQSPISQTPPQCALPAALLKNPSSVPNVQPASTQKPRSNSI 401
S R S QTPP LP+ LL + P+ P +P+ NS+
Sbjct: 15 SKRSSRKRQTPPMPELPSFLL----AFPHAPPLGFLRPKLNSL 53
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.2 bits (55), Expect = 5.0
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +1
Query: 130 TANRFLQGGS*SRIPLKCLMSIPAHRAEPSTP--PLLEVQE 246
T N+ + GG P+ IPA AEP+ P P EV E
Sbjct: 875 TVNQIMSGGEALAAPVAVPAPIPAPVAEPAPPAAPAKEVVE 915
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 288 PISQTPPQCALPAALLKNPSSVPNVQPASTQKP 386
PI + P A PAA +K+P S P++ A P
Sbjct: 166 PIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMP 198
>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 571
Score = 25.8 bits (54), Expect = 6.6
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 156 VLITDPAQMPDVYSSTPGGTIYSTTPGGTRIVYERSFMLSLRQSPISQT 302
VL+TD +P+V+SS G + P +R + E + ISQ+
Sbjct: 109 VLVTDEQDVPEVWSSKSLGKLEGFMPELSRQIVETDRSVMEHVDKISQS 157
>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 387
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 285 SPISQTPPQCALPAALLKNPSSV 353
+P P CALPA LK P S+
Sbjct: 247 NPYGFMEPDCALPADPLKTPMSI 269
>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 385
Score = 25.8 bits (54), Expect = 6.6
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 108 PIARQATHSQSIPSRRVLITDPAQMPDVYSSTPGGTIYSTTPGGT 242
P + Q + S + V+++ + + SSTP TIYS T G T
Sbjct: 108 PSSSQTISASSSTTDNVIVS--SSISSTVSSTPVSTIYSGTSGTT 150
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 25.4 bits (53), Expect = 8.7
Identities = 30/125 (24%), Positives = 48/125 (38%), Gaps = 10/125 (8%)
Frame = +3
Query: 81 RKFLIMSASPIARQATHSQSIPSRRVLITDPAQMPDVYSSTPGG---TIYSTTPGG--TR 245
RK I S P Q +S+PS++ T + S P T + P T
Sbjct: 676 RKESIPSKQPTEGQHARQESLPSQQTTETKHLRKESTPSKQPTEGQHTRQESLPSQQTTE 735
Query: 246 IVYERSFMLSLRQSPISQTPPQCALPAALLKNPS-----SVPNVQPASTQKPRSNSISFD 410
+ R + +Q Q Q +LP+ S+P+ QP+ Q+ R S+
Sbjct: 736 TKHLRKESIPSKQPTEGQHARQESLPSQQTTETKHLRKESIPSKQPSGGQQLRQESLPSQ 795
Query: 411 ESQET 425
+S E+
Sbjct: 796 QSSES 800
>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 609
Score = 25.4 bits (53), Expect = 8.7
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +3
Query: 99 SASPIARQATHSQSIPSRRVLITDPAQMPDVYSSTPGGT-IYSTTPGGTRIVYERSF 266
+ SP + HS+ P + A + ++++TP G Y + G + Y SF
Sbjct: 256 TVSPTNEPSAHSRPSPQGTTANSSSASISSLHNTTPDGEGKYRSVQNGRALNYVSSF 312
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,078,508
Number of Sequences: 5004
Number of extensions: 64247
Number of successful extensions: 183
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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