Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_M24
(747 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0668 - 5109476-5110112,5110196-5110439,5110519-5110917,511... 31 0.97
12_02_0674 - 21745321-21746223,21746229-21747608 30 1.7
01_01_1022 - 8064032-8064657,8064823-8064893,8065926-8066047,806... 30 2.2
12_01_0919 - 9086879-9087064,9087842-9087923,9088357-9089553,908... 29 3.0
03_02_0865 - 11895257-11895340,11896004-11896069,11896297-118963... 29 3.0
02_05_0313 - 27795152-27795268,27795476-27795515,27795773-277958... 29 3.0
06_01_0993 + 7710016-7710977,7711081-7711316,7711422-7711501,771... 29 3.9
06_01_0992 - 7705550-7705629,7706046-7706676,7707217-7707669 29 5.2
02_05_1033 + 33642479-33642688,33643089-33643343,33643479-336436... 29 5.2
08_01_1036 + 10520727-10521117,10521301-10521479,10521603-105225... 28 6.9
04_01_0617 - 8076624-8076971,8077761-8077883,8077965-8078035,807... 28 6.9
12_02_0998 + 25126114-25126596,25129213-25129339,25129349-251294... 28 9.1
08_01_0985 - 9960064-9960249,9960327-9960419,9960518-9960578,996... 28 9.1
>01_01_0668 -
5109476-5110112,5110196-5110439,5110519-5110917,
5111390-5111668,5111886-5112257,5112371-5112475,
5112832-5112909,5112990-5113199,5113287-5113406,
5113508-5113606,5113685-5113750,5113914-5114141,
5114216-5114521,5115324-5115381
Length = 1066
Score = 31.1 bits (67), Expect = 0.97
Identities = 26/104 (25%), Positives = 38/104 (36%), Gaps = 3/104 (2%)
Frame = +3
Query: 99 SASPIARQATHSQSIPSRRVLITDPAQMPDVYSSTPGGTIYSTTPGGTRIVYERSFMLSL 278
SASP + S ++P+R P P Y++ P + P V +
Sbjct: 92 SASPPVAKGAVSPAVPTRPQNAPTPVTPPKEYNAPPPVELTPPAPTHVAPVAPPQAAVEN 151
Query: 279 RQSPISQTP---PQCALPAALLKNPSSVPNVQPASTQKPRSNSI 401
+ TP P PA + ++P VQP S P S I
Sbjct: 152 PAPVLPGTPALLPSVQAPAPSVARNPNLPIVQPPSVNNPPSRPI 195
>12_02_0674 - 21745321-21746223,21746229-21747608
Length = 760
Score = 30.3 bits (65), Expect = 1.7
Identities = 27/87 (31%), Positives = 36/87 (41%)
Frame = +3
Query: 138 SIPSRRVLITDPAQMPDVYSSTPGGTIYSTTPGGTRIVYERSFMLSLRQSPISQTPPQCA 317
S S R L T ++P + P T S P R + +LS S I TP C
Sbjct: 510 STASTRELSTATGKIPSTPRTNPLSTATSKIPSTPR-----TSLLSSSTSKIPSTPSTCE 564
Query: 318 LPAALLKNPSSVPNVQPASTQKPRSNS 398
L A K PS+ P ST +++S
Sbjct: 565 LSTATGKIPSTT-CTSPLSTATGKTSS 590
>01_01_1022 -
8064032-8064657,8064823-8064893,8065926-8066047,
8066540-8066689,8067153-8067179,8067485-8067552,
8067679-8067874
Length = 419
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +3
Query: 279 RQSPISQTPPQCALPAALLKNPSSVPNVQPASTQKPRSNSISFDESQETFSMDL 440
+Q P Q Q P A P+ P A QKP S+S++E + FS+ +
Sbjct: 8 QQQPQQQQEQQ---PVAAAAVPTPAPPASEAQPQKPTRVSLSYEEISKLFSLPI 58
>12_01_0919 -
9086879-9087064,9087842-9087923,9088357-9089553,
9089598-9089961,9090086-9090188,9090234-9090479
Length = 725
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +3
Query: 279 RQSPISQTPPQCALPAALLKNPSSVPNV 362
+++P+ Q PP+ A+PA ++ P VPNV
Sbjct: 529 KENPVLQVPPEIAVPAVAMEIP--VPNV 554
>03_02_0865 -
11895257-11895340,11896004-11896069,11896297-11896355,
11896470-11896557,11897158-11897328,11897406-11897564,
11897653-11897835,11897931-11898012,11898753-11898959,
11899099-11899170,11901948-11902055,11902460-11902506
Length = 441
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +3
Query: 285 SPISQTPPQCALPAALLKNPSSVPNVQPASTQKPRSNSISFDESQ 419
+P P LP+ + P P QP++ KP +S DES+
Sbjct: 184 APFRMALPTPPLPSQVPAPPPPPPPPQPSAANKPHLTDLSSDESE 228
>02_05_0313 -
27795152-27795268,27795476-27795515,27795773-27795873,
27796862-27796921,27797185-27797294,27797911-27798033,
27798148-27798271,27798585-27798642,27798713-27798841,
27799602-27799762
Length = 340
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = +2
Query: 113 REAGHPQPIDSFKEGPDHGSRSNA*CLFQHTGRNHLLHHSWRYKNSVREVVHVIPSAIPD 292
R+A HP P + K P + ++++ + +++G N + SW + + V + +PD
Sbjct: 144 RKAAHPYPQKASKNEPGYTIKADSSSMLRNSGMNATV-SSWTHNSIPPIVASSMVKVMPD 202
Query: 293 F 295
F
Sbjct: 203 F 203
>06_01_0993 +
7710016-7710977,7711081-7711316,7711422-7711501,
7711977-7712072,7712995-7713892,7713983-7714093,
7714657-7714751
Length = 825
Score = 29.1 bits (62), Expect = 3.9
Identities = 19/66 (28%), Positives = 28/66 (42%)
Frame = +3
Query: 270 LSLRQSPISQTPPQCALPAALLKNPSSVPNVQPASTQKPRSNSISFDESQETFSMDL*AS 449
LS++ PIS + + N S P+VQP S +S +E FS+ S
Sbjct: 474 LSIKLDPISNSRININSASGRASNDSQAPSVQPQKCGPVDSTVVSMALKREQFSIPSMCS 533
Query: 450 H*FSEY 467
FS +
Sbjct: 534 ESFSSH 539
>06_01_0992 - 7705550-7705629,7706046-7706676,7707217-7707669
Length = 387
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = -1
Query: 372 WPAARWVPKTDSSVGLREVHIAVAFGKSGIAEGIT*TTSRTLFLYLQEWWS 220
W A +W DS+ + H AFG + + + TT L+ + WS
Sbjct: 143 WSATQWSAAADSNSDHLDCHGGDAFGVALVGTDVAGTTHAALYSSATDAWS 193
>02_05_1033 +
33642479-33642688,33643089-33643343,33643479-33643603,
33643827-33643908,33644008-33644076,33644102-33644341,
33644431-33644496,33645087-33645155,33645229-33645366,
33645681-33645754,33646146-33646255,33646428-33646525,
33646595-33646633,33646771-33646890,33646984-33647109,
33647321-33647382,33647467-33647518,33648182-33648436
Length = 729
Score = 28.7 bits (61), Expect = 5.2
Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 5/103 (4%)
Frame = +3
Query: 69 KLTPRKFLIMSASPIARQATHSQSIPSRRVLITDPAQMPDVYSSTPGGTIYSTTPG--GT 242
K+TP + A Q +HS S ++ P+ + + S+ GG++Y T
Sbjct: 502 KVTPGHVELDKAHSPGLQKSHSMQAISHLPSLSIPSSI-EAASTIIGGSLYMQLYNVLQT 560
Query: 243 RIVYERSFMLSLRQ---SPISQTPPQCALPAALLKNPSSVPNV 362
++ + +++Q ++ T P C PA+ +PSS ++
Sbjct: 561 NMLQREQILHAMKQLSGCDMAMTSPACIAPASRASSPSSALSI 603
>08_01_1036 +
10520727-10521117,10521301-10521479,10521603-10522593,
10522613-10522656
Length = 534
Score = 28.3 bits (60), Expect = 6.9
Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Frame = +3
Query: 96 MSASPIARQATHSQSI-PSRRVLITD-PAQMPDVYSSTPGGTIYSTTPGGTRIVYERSFM 269
M A A + Q + P+ R LITD + V S P T TTP T + +
Sbjct: 129 MQAEHQAAGPVYLQGVFPNYRSLITDVQPSIQAVPSVAP--TTQPTTPTSTPLPAPSAMA 186
Query: 270 LSLRQSPISQTPP 308
Q PI QTPP
Sbjct: 187 PGQPQQPIQQTPP 199
>04_01_0617 -
8076624-8076971,8077761-8077883,8077965-8078035,
8078108-8078360,8078613-8078768,8078854-8079770,
8079858-8079927,8082310-8082416,8082722-8082755,
8083621-8083940,8084031-8084820,8084890-8085046,
8085647-8086068
Length = 1255
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Frame = +3
Query: 288 PISQTPPQCA----LPAALLKNPSSVPNVQPASTQKPRSN 395
P+ T CA P + + P+S P + PAS++KP+ N
Sbjct: 4 PLRSTVLVCASAAMAPTSAPRLPTSAPPISPASSRKPKPN 43
>12_02_0998 +
25126114-25126596,25129213-25129339,25129349-25129459,
25130122-25130270,25130356-25130643,25130753-25130941,
25131445-25131619,25132219-25132316
Length = 539
Score = 27.9 bits (59), Expect = 9.1
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = +3
Query: 171 PAQMPDV-YSSTP--GGTIYSTTPGGTRIVYERSFMLSLRQSPISQTPPQCALPAALLKN 341
PAQ D YSS P GGT Y + PGG S+ ++ TP C++P +L++
Sbjct: 472 PAQPVDTGYSSYPPYGGTSYGSPPGGAGPHNGGSY------GAVTGTP--CSMPVHVLQD 523
Query: 342 PSS 350
P +
Sbjct: 524 PGT 526
>08_01_0985 -
9960064-9960249,9960327-9960419,9960518-9960578,
9960667-9960774,9960921-9961106,9961427-9962421,
9962626-9962988,9963085-9963333,9963419-9963574
Length = 798
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 279 RQSPISQTPPQCALPAALLKNPSSVPNV 362
+++P+ + PP+ A+P A L+ P VP V
Sbjct: 442 KENPVPEVPPEIAVPEAALETP--VPEV 467
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,094,554
Number of Sequences: 37544
Number of extensions: 476530
Number of successful extensions: 1369
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1369
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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