Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_M24
         (747 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47700| Best HMM Match : eIF_4EBP (HMM E-Value=3e-35)                97   1e-20
SB_15435| Best HMM Match : Fic (HMM E-Value=7.5)                       30   2.3  
SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_22927| Best HMM Match : SerH (HMM E-Value=1.1)                      29   4.0  
SB_3371| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.0  
SB_44796| Best HMM Match : Cornifin (HMM E-Value=1.7)                  29   4.0  
SB_44745| Best HMM Match : zf-C2H2 (HMM E-Value=2.2e-05)               29   5.3  
SB_27848| Best HMM Match : zf-C2H2 (HMM E-Value=1.49995e-41)           29   5.3  
SB_25735| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_59712| Best HMM Match : SAP (HMM E-Value=3e-13)                     28   9.2  
SB_59549| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  
SB_17639| Best HMM Match : Paf1 (HMM E-Value=0)                        28   9.2  

>SB_47700| Best HMM Match : eIF_4EBP (HMM E-Value=3e-35)
          Length = 148

 Score = 97.5 bits (232), Expect = 1e-20
 Identities = 48/102 (47%), Positives = 68/102 (66%)
 Frame = +3

Query: 96  MSASPIARQATHSQSIPSRRVLITDPAQMPDVYSSTPGGTIYSTTPGGTRIVYERSFMLS 275
           M+ +   R +  +++IPSRRV + DP  MP  YS+TPGGTIYSTTPGGTRI+YER F+L 
Sbjct: 1   MNGTQAERGSPLARAIPSRRVPVHDPNHMPSDYSTTPGGTIYSTTPGGTRIIYERKFLLE 60

Query: 276 LRQSPISQTPPQCALPAALLKNPSSVPNVQPASTQKPRSNSI 401
           LR SP++++PP   LP  ++   +   N +P   +KP   S+
Sbjct: 61  LRNSPLAKSPP-ANLP--VIPGVTCEDNGKPEPEEKPEVTSL 99


>SB_15435| Best HMM Match : Fic (HMM E-Value=7.5)
          Length = 695

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +1

Query: 331 Y*RIRLRYPTCSRPAHKNLDLTRYHSTSRRKPS 429
           Y ++RL YP+ S P  K+  LT Y STS   P+
Sbjct: 131 YRKVRLTYPSFSSPNGKDGGLTSYISTSFSPPN 163


>SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3066

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 141  IPSRRVLITDPAQMPDVYSSTPGGTIYSTTPGGTRIVYERS 263
            +PS  +++  P+    VYS  P G I   +P G +IVY  S
Sbjct: 1125 LPSSEIIVYSPSGEKIVYS--PSGEIIVYSPSGKKIVYSPS 1163


>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1229

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = +3

Query: 96  MSASPIARQATHSQSIPSRRVLITDPAQMPDVYSST-PGGTIYSTTPGGTRIVYERSFML 272
           MS S +A   T   S+   R L++    +P + +S  P  T    TP  TR+V       
Sbjct: 528 MSPSYVANMTTLDSSVSLTRSLLSTTL-IPSISTSILPYNTTVIATPNTTRLVTSTISSS 586

Query: 273 SLRQSPISQTP 305
           ++  S IS TP
Sbjct: 587 TVNVSAISTTP 597


>SB_22927| Best HMM Match : SerH (HMM E-Value=1.1)
          Length = 678

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = +3

Query: 132 SQSIPSRRVLITDPAQMPDVYSSTPGGTIYSTTPGGTRIVYERSFMLSLRQSPISQTPPQ 311
           SQ+  S +V +T+ + +P V   T   T+ S       +VY R    S+  SP+S   PQ
Sbjct: 115 SQAQFSAKVTLTN-SHLPSVIKPTEATTLKSYKTKVPTLVYSRVENTSVESSPLSTATPQ 173


>SB_3371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1135

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = -2

Query: 614 GNDVLSNMFFCCV*LWLTSQTAHRRLKDRASETFASLRWQAVF 486
           GN VL + +   + +++ SQ + +  K  + ETFA  RW+ +F
Sbjct: 553 GNPVLVDCYASVLHMFVVSQNSRKLAK--SEETFAEWRWKKIF 593


>SB_44796| Best HMM Match : Cornifin (HMM E-Value=1.7)
          Length = 165

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 22/82 (26%), Positives = 34/82 (41%)
 Frame = +1

Query: 169 IPLKCLMSIPAHRAEPSTPPLLEVQE*CTRGRSCYPFGNPRFPKRHRNVHFPQPY*RIRL 348
           IP     +IP HR    TP      +   R  +   + N   P+ HR+    Q    +  
Sbjct: 12  IPQHNNTAIPQHRTT-KTPQHQNTAKPQHRNTTTPRYHNTAIPQ-HRDTATQQHRNTVTP 69

Query: 349 RYPTCSRPAHKNLDLTRYHSTS 414
           RY   + P H++    RYH+T+
Sbjct: 70  RYHNTTIPQHRDTTTPRYHNTA 91


>SB_44745| Best HMM Match : zf-C2H2 (HMM E-Value=2.2e-05)
          Length = 572

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = +3

Query: 69  KLTPRKFLIMSASPIARQATHSQSIPSRRVLITDPAQMPDVYSSTPGGTIYSTTPGGTRI 248
           ++T  +  + SAS      T  QS+P     +T P Q+  +  STP  T+Y  T  G  I
Sbjct: 423 QVTGPQIKLPSASGSRHHPTTPQSLPVDMQQVTPP-QVNPITISTPSSTLYDCTYCGDNI 481


>SB_27848| Best HMM Match : zf-C2H2 (HMM E-Value=1.49995e-41)
          Length = 257

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
 Frame = +3

Query: 216 IYSTTPGGTRIVYERSFMLSLRQSPISQT----PPQCALPAALLKNPSSVPNVQPAS-TQ 380
           +Y + PG +R   E + +  +RQS +S+T    P +  L A+   + SS   +   S  +
Sbjct: 66  LYDSFPGASRSEAESTLLARMRQSQVSETQERQPMKTWLRASDSNHKSSKKKIFTCSICE 125

Query: 381 KPRSNSISFDE 413
           K  SNSIS  +
Sbjct: 126 KIFSNSISLKQ 136


>SB_25735| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 303

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = -3

Query: 418 CDSSNDIELDRGFCVLAGCTLGTEDGFFSRAAGSAHCGGVW 296
           C  ++ + ++RG+ + +  T  + DG ++ +AG  + G  W
Sbjct: 202 CTCASSLGVERGYILDSQMTSSSNDGAYTASAGRLYGGSSW 242


>SB_59712| Best HMM Match : SAP (HMM E-Value=3e-13)
          Length = 1072

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/59 (25%), Positives = 25/59 (42%)
 Frame = +2

Query: 44  QVSCVEFCKINTTKVFNNVSVTYREAGHPQPIDSFKEGPDHGSRSNA*CLFQHTGRNHL 220
           Q +  ++ +I  T         +++ GH QP + F   P H    N   +FQ    +HL
Sbjct: 246 QAAPPQYQQIQATHQPTQQQTFFQQQGHQQPGNIFDNPPFHPQSPNQPQIFQQQALHHL 304


>SB_59549| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2631

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 352  YPTCSRPAHKNLDLTRYHSTSRRKPSAWISKLVI 453
            Y T   P     DLT +HS S R PS ++ ++V+
Sbjct: 1410 YLTTPEPLGTISDLTVWHSDSGRSPSWYLRRIVV 1443


>SB_17639| Best HMM Match : Paf1 (HMM E-Value=0)
          Length = 335

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = +2

Query: 473 TCYCQ---IRLATASLRMFRLLCLLDVCGLFVKLARAKHNKKTCLT 601
           TC+ +   I+       + R+LC LD   L+VK+ + KH+KK+ +T
Sbjct: 230 TCFPEGENIKFCHLDRAIVRILCDLDPLVLYVKITQ-KHDKKSVVT 274


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,020,615
Number of Sequences: 59808
Number of extensions: 531786
Number of successful extensions: 1255
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1250
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)