Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_M23
         (479 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0816 + 27928812-27930059,27931007-27931111,27931197-279312...    33   0.091
01_05_0539 + 23031976-23032216,23032896-23033341                       28   3.4  
01_06_1488 + 37716986-37717076,37717424-37717558,37717755-377178...    27   7.9  

>03_05_0816 + 27928812-27930059,27931007-27931111,27931197-27931262,
            27931337-27931501,27931671-27931745,27931829-27931983,
            27932234-27932369,27932454-27932523,27932602-27932729,
            27932838-27932894,27933326-27933511,27934031-27934123,
            27934488-27934573,27934668-27934734,27934873-27934939,
            27935016-27935152,27935618-27935709,27935849-27935915,
            27936058-27936078
          Length = 1006

 Score = 33.5 bits (73), Expect = 0.091
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
 Frame = +1

Query: 127  SRYY*ITLHDRPCQLLNALVIDNVVPGVDRV-W*HRSTVGISR-IPGWRLVLPFLQKLFS 300
            SR Y +  H     L NA+  DN V  + ++   HR  +  S+ +P W   LP    L  
Sbjct: 905  SRLYNVIKHPNALDLDNAMAYDNAVSALGKICQFHRDGIDASQVVPAWLSCLPIKNDLIE 964

Query: 301  DLLLNDNQVSFLNK 342
              ++++   + L K
Sbjct: 965  AKIVHEQLCTMLEK 978


>01_05_0539 + 23031976-23032216,23032896-23033341
          Length = 228

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -2

Query: 367 FINKESYFIYLKKKLDYR*AINPRRVFEEMATLSANRGSGKYRPLTDVTRPDR 209
           + +   Y   L KK+ Y    N R +   + T+  +R  G YR   D+TR +R
Sbjct: 66  YAHTREYSPKLLKKIGYH-LYNCRELTIPLQTIEESRAGGAYRETHDMTRNER 117


>01_06_1488 +
           37716986-37717076,37717424-37717558,37717755-37717831,
           37717934-37718181,37718503-37718559,37718665-37718800,
           37718944-37719001,37719110-37719195,37719270-37719326,
           37719537-37719557,37720553-37720954,37721500-37721647,
           37721940-37722036,37724065-37724202,37724496-37724598,
           37724792-37724828,37724905-37725014,37725141-37725164
          Length = 674

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 141 NNVARSALSTIKCFSN*QRRAGRRSGLVTSVNGRYFPDPRLALSV 275
           N +  S    +K F   +RRAG  S    ++ G    DPR  L+V
Sbjct: 361 NTIEPSTQKALKKFGEKERRAGDESSRTLAMAGEAGGDPRAWLAV 405


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,638,339
Number of Sequences: 37544
Number of extensions: 179323
Number of successful extensions: 344
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 344
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)