Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_M22
         (548 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    26   0.19 
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    26   0.19 
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    26   0.19 
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    25   0.44 
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    25   0.44 
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    23   2.3  

>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 26.2 bits (55), Expect = 0.19
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = -2

Query: 283 EKSCLRPFVLLMVENFSFLDFQNLPDFG--IPLIVFPFSCFLFSLRTGALFAIVTSLYLS 110
           EK  L   +LL +  F  L  + LP     IPL+   F+C +F + +  +  +V   Y  
Sbjct: 241 EKLTLGVTILLSLTVFLNLVAETLPQVSDAIPLLGTYFNCIMFMVASSVVLTVVVLNYHH 300

Query: 109 R 107
           R
Sbjct: 301 R 301


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 26.2 bits (55), Expect = 0.19
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = -2

Query: 283 EKSCLRPFVLLMVENFSFLDFQNLPDFG--IPLIVFPFSCFLFSLRTGALFAIVTSLYLS 110
           EK  L   +LL +  F  L  + LP     IPL+   F+C +F + +  +  +V   Y  
Sbjct: 241 EKLTLGVTILLSLTVFLNLVAETLPQVSDAIPLLGTYFNCIMFMVASSVVLTVVVLNYHH 300

Query: 109 R 107
           R
Sbjct: 301 R 301


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 26.2 bits (55), Expect = 0.19
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = -2

Query: 283 EKSCLRPFVLLMVENFSFLDFQNLPDFG--IPLIVFPFSCFLFSLRTGALFAIVTSLYLS 110
           EK  L   +LL +  F  L  + LP     IPL+   F+C +F + +  +  +V   Y  
Sbjct: 241 EKLTLGVTILLSLTVFLNLVAETLPQVSDAIPLLGTYFNCIMFMVASSVVLTVVVLNYHH 300

Query: 109 R 107
           R
Sbjct: 301 R 301


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 25.0 bits (52), Expect = 0.44
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = -2

Query: 283 EKSCLRPFVLLMVENFSFLDFQNLPDFG--IPLIVFPFSCFLFSLRTGALFAIVTSLYLS 110
           EK  L   +LL +  F  L  + +P     +PLI   F+C +F + +  +  +V   Y  
Sbjct: 241 EKLTLGVTILLSLTVFLNLVAEKIPTTSDAVPLIGTYFNCIMFMVASSVVLTVVVLNYHH 300

Query: 109 R 107
           R
Sbjct: 301 R 301


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 25.0 bits (52), Expect = 0.44
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = -2

Query: 283 EKSCLRPFVLLMVENFSFLDFQNLPDFG--IPLIVFPFSCFLFSLRTGALFAIVTSLYLS 110
           EK  L   +LL +  F  L  + +P     +PLI   F+C +F + +  +  +V   Y  
Sbjct: 241 EKLTLGVTILLSLTVFLNLVAEKIPTTSDAVPLIGTYFNCIMFMVASSVVLTVVVLNYHH 300

Query: 109 R 107
           R
Sbjct: 301 R 301


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 183 KTIRGIPKSGRFWKSKKE 236
           K I GIP  GR WK  ++
Sbjct: 284 KLILGIPAYGRAWKMDED 301


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,891
Number of Sequences: 336
Number of extensions: 1697
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13516233
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)