Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_M22
(548 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1556.05c |||CGR1 family|Schizosaccharomyces pombe|chr 1|||Ma... 31 0.15
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch... 29 0.34
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 29 0.34
SPBC21D10.07 |||UPF0287 family protein|Schizosaccharomyces pombe... 26 3.2
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha... 26 4.2
SPAC186.05c |||human TMEM165 homolog|Schizosaccharomyces pombe|c... 25 7.3
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 25 9.7
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc... 25 9.7
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 25 9.7
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 25 9.7
>SPAC1556.05c |||CGR1 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 111
Score = 30.7 bits (66), Expect = 0.15
Identities = 18/100 (18%), Positives = 45/100 (45%)
Frame = +3
Query: 192 RGIPKSGRFWKSKKEKFSTINKTKGLKQDFSKKTALRLELKRTKEISKQAXXXXXXXXXX 371
+G+ SG+ WK++K+ ++ + + K+ + +L KE K+
Sbjct: 6 KGVCVSGKPWKTEKKAYNRSGLADAQRTPYEKRMEQKRKLDEIKEREKELKREKEEQRAA 65
Query: 372 XXXXXXXNLKKAEENRKKSEVVQVITNTTKLKRMRKKQLR 491
++A+ +R++ E++Q + + R R+++ R
Sbjct: 66 HAEKIRTR-RQAKADRERMELLQAKLHQKVIDRRRRREKR 104
>SPAC22A12.14c |||BSD domain protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 29.5 bits (63), Expect = 0.34
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +3
Query: 159 EKRKQEKGKTIRGIP--KSGRFWKSKKEKFST-INKTKGLKQDFSKKTALRLE 308
EK K+E G + + K G FW S KEK ++ TKG ++ +LE
Sbjct: 22 EKLKEEMGSALNNLTNGKFGLFWNSMKEKSENFLDDTKGKASSGMQQLKSQLE 74
>SPBC12C2.02c |ste20|ste16|sterility protein
Ste20|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1309
Score = 29.5 bits (63), Expect = 0.34
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +3
Query: 99 TKSRDKYKEVTIAN--NAPVLSEKRKQEKGKTIRGIPKSGRFWKSKKEKFSTINKTK 263
TK+ K++ T+ P+LS KR E +T + + + F+K +FS+I TK
Sbjct: 713 TKNYQKWRWDTLVQIMEGPLLSPKRIDETLRTTKFMRRLLAFYKPFSNRFSSIQNTK 769
>SPBC21D10.07 |||UPF0287 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 104
Score = 26.2 bits (55), Expect = 3.2
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 399 KKAEENRKKSEVVQVITNTTKLKRMRKK 482
K EENRKK E+ + I L++ RKK
Sbjct: 65 KVIEENRKKEEIEERILTDRILQQERKK 92
>SPCC364.06 |nap1||nucleosome assembly protein Nap1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 393
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 147 PVLSEKRKQEKGKTIRGIPKSGRFW 221
P SE +KQE G +GIP+ FW
Sbjct: 147 PTSSESKKQEGGDDTKGIPE---FW 168
>SPAC186.05c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 262
Score = 25.0 bits (52), Expect = 7.3
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +3
Query: 168 KQEKGKTIR-GIPKSGRFWKSKKEKFSTINKTKGLKQDFSKK 290
+++ KT+ G+P S R + K+KF + K FSKK
Sbjct: 133 EEDMKKTLELGLPASNRSSSTLKDKFFKVFSMSCFKNLFSKK 174
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 66 QAKVSSIVTDITKSRDKYKEVTIANN 143
+ K+S IV I + KEVTIA N
Sbjct: 2476 ELKLSDIVCSIISTASLQKEVTIAEN 2501
>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 536
Score = 24.6 bits (51), Expect = 9.7
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Frame = +3
Query: 129 TIANNAPVLSEKRKQEKGKTIRGIPKSGRF----WKSKKEKFS-TINKT 260
T N P L EKR++ GK + G+ F ++ K E +S IN+T
Sbjct: 475 TYKTNTPNLDEKRREFYGKRVIGVRMCWDFPPVEYEDKDEIWSPVINRT 523
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1647
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 30 KILTKIVMADETQAKVSSIVTDITKSRDKYKEV 128
++L K V+ + +S + D+T SR YKEV
Sbjct: 880 RVLFKNVVPYIAELGISKYILDLTISRRAYKEV 912
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +3
Query: 57 DETQAKVSSIVTDITKSRDKYKEVTIANNAPVLSEKRKQ 173
++ +A+++S++ + RDK+ N LS KRKQ
Sbjct: 643 NDREARIASVMEG-REGRDKFSSKKAGFNPTSLSNKRKQ 680
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,654,177
Number of Sequences: 5004
Number of extensions: 30313
Number of successful extensions: 112
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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