Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_M22
(548 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35536| Best HMM Match : zf-C2H2 (HMM E-Value=0.0069) 34 0.088
SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.27
SB_40929| Best HMM Match : Attractin (HMM E-Value=5.1) 31 0.82
SB_47950| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_45217| Best HMM Match : Linker_histone (HMM E-Value=4.4e-27) 30 1.4
SB_58672| Best HMM Match : PHD (HMM E-Value=3e-18) 29 3.3
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19) 29 3.3
SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0) 29 3.3
SB_10748| Best HMM Match : GETHR (HMM E-Value=1.5) 29 3.3
SB_21874| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_32504| Best HMM Match : TolA (HMM E-Value=0.52) 28 4.4
SB_54976| Best HMM Match : MFS_1 (HMM E-Value=0.00064) 28 5.8
SB_26233| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_908| Best HMM Match : DUF1682 (HMM E-Value=3.1e-38) 28 5.8
SB_59580| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_41489| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_34195| Best HMM Match : Init_tRNA_PT (HMM E-Value=2.7) 27 7.6
SB_29057| Best HMM Match : Rad9 (HMM E-Value=9.3e-10) 27 7.6
SB_10926| Best HMM Match : Pkinase (HMM E-Value=3e-24) 27 7.6
SB_43428| Best HMM Match : Glyco_hydro_47 (HMM E-Value=0) 27 7.6
SB_41305| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_40923| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.29) 27 7.6
>SB_35536| Best HMM Match : zf-C2H2 (HMM E-Value=0.0069)
Length = 657
Score = 33.9 bits (74), Expect = 0.088
Identities = 25/112 (22%), Positives = 53/112 (47%), Gaps = 3/112 (2%)
Frame = +3
Query: 12 RTTNYTKILTKIVMADETQAKVSSIVTDITKSRDKY-KEVTIANNAPVLSEKRKQEKGKT 188
RT ++ ++V +E + K+ + + + + K ++ + V + KQ T
Sbjct: 56 RTCEMGEVTFEVVALNEERDKLQKSAECLKEEKQELCKLLSESQENEVRLNQEKQLTDAT 115
Query: 189 IRGIPKS-GRFWKSKKEKFSTINKTKGLKQDFSK-KTALRLELKRTKEISKQ 338
I+ + + + K K+E+ + + KG KQD + K L E KRT ++ ++
Sbjct: 116 IKKLEEMIAKLQKEKREEQTLVMDGKGFKQDIERMKNELETERKRTSQLVEE 167
>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4924
Score = 32.3 bits (70), Expect = 0.27
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +3
Query: 30 KILTKIVMADETQAKVSSIVTDITKSRDKYKEVTIANNAPV 152
K ++K+ D +++V + ITKS DK+++ I++ PV
Sbjct: 1601 KPISKVDNQDAAKSEVEDAIDSITKSNDKFEDAVISSPTPV 1641
>SB_40929| Best HMM Match : Attractin (HMM E-Value=5.1)
Length = 566
Score = 30.7 bits (66), Expect = 0.82
Identities = 29/141 (20%), Positives = 56/141 (39%)
Frame = +3
Query: 99 TKSRDKYKEVTIANNAPVLSEKRKQEKGKTIRGIPKSGRFWKSKKEKFSTINKTKGLKQD 278
TK +D+ K+ A RK + KT R P+ + + K S K K +
Sbjct: 164 TKPQDQDKQDARPRQARPREASRKTKTSKTKRSKPQDKQAERQASRKTSK-PKDKQAARQ 222
Query: 279 FSKKTALRLELKRTKEISKQAXXXXXXXXXXXXXXXXXNLKKAEENRKKSEVVQVITNTT 458
S+KT+ E K+ ++QA K E+N+++ + +
Sbjct: 223 ASRKTSKPQE----KQAARQASSKTKTSRKTKTSRKTKTSKPQEKNKQEQDKQAARQASR 278
Query: 459 KLKRMRKKQLRFIEKRDTNKE 521
K + + + + +K+D +K+
Sbjct: 279 KTSKTKTSKPQEKDKQDEDKQ 299
>SB_47950| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 296
Score = 29.9 bits (64), Expect = 1.4
Identities = 33/165 (20%), Positives = 60/165 (36%), Gaps = 6/165 (3%)
Frame = +3
Query: 60 ETQAKVSSIVTDITKSRDKYKEVTIANNAPVLSEKRKQEK-GKTIRGIPKSGRFWKSKKE 236
ET S++ +D+++ E N + ++ K+EK G K K
Sbjct: 84 ETDKDASAVSSDVSEDESCQAERKKKNKKSKIKKREKEEKYGLCNHESQKEKEISICKGS 143
Query: 237 KFSTINKTKGLKQDFSKKTALRLELKRTKEISKQAXXXXXXXXXXXXXXXXXNLKKAEEN 416
+ K + KK +K KE+ K +E
Sbjct: 144 DQGLVEKELFSLKKKGKKAKKAKNVKTVKEVDMDDSDGSANAVKAKEQTSRTKRKGKKEK 203
Query: 417 RK-KSEVVQVITN----TTKLKRMRKKQLRFIEKRDTNKEVESSK 536
RK K+EV+++ N T K K + K+ + E+ ++ E+ S+
Sbjct: 204 RKRKTEVIEISDNEASDTGKAKETKIKKKKDKERVESILEISDSE 248
>SB_45217| Best HMM Match : Linker_histone (HMM E-Value=4.4e-27)
Length = 228
Score = 29.9 bits (64), Expect = 1.4
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +3
Query: 168 KQEKGKTIRGIPKSGRFWKSKKEKFSTINKT--KGLKQDFSKKTALRLELKRTKEISK 335
K +K K + PKS + KSK + T K+ K K+D T + K TK +K
Sbjct: 131 KTKKSKKVTSEPKSPKVKKSKDKSTKTTKKSDAKSPKKDAKSPTTTKKTSKTTKTAAK 188
>SB_58672| Best HMM Match : PHD (HMM E-Value=3e-18)
Length = 458
Score = 28.7 bits (61), Expect = 3.3
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +3
Query: 183 KTIRGIPKSGRFWKSKKEKFSTINKTKGLKQDFSKKTALRLELKRTK 323
K IRG PK+G+ KK KT LK+ ++K +L KRT+
Sbjct: 21 KVIRG-PKAGKEKVKKKSDKKPAKKTLQLKRKENRKKNTKLMRKRTR 66
>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
Length = 3107
Score = 28.7 bits (61), Expect = 3.3
Identities = 19/69 (27%), Positives = 31/69 (44%)
Frame = +3
Query: 57 DETQAKVSSIVTDITKSRDKYKEVTIANNAPVLSEKRKQEKGKTIRGIPKSGRFWKSKKE 236
+ +AKVS + +IT R K E+ NN + K K+E + G+ K + E
Sbjct: 963 EHERAKVSELEHEITNHRRKVAELEALNNVAI---KEKEELEVDVDGLESKVSSLKMEIE 1019
Query: 237 KFSTINKTK 263
+ + N K
Sbjct: 1020 RLTNDNADK 1028
>SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0)
Length = 442
Score = 28.7 bits (61), Expect = 3.3
Identities = 41/174 (23%), Positives = 66/174 (37%), Gaps = 10/174 (5%)
Frame = +3
Query: 45 IVMADETQAKVSSIVTDITKSRDKYKEVTIANNAPVLSEKRK-----QEKGKTIRGIPKS 209
+V+AD A +VT DK K+ ++ + P + + K P++
Sbjct: 262 VVIADNAPA--GGLVTAAPSPPDK-KQSSVCHTPPKTPSSKTTPADAETKTSPSTTSPQT 318
Query: 210 GRFWKSKKEKFSTINKTKGLKQDF-----SKKTALRLELKRTKEISKQAXXXXXXXXXXX 374
+ + K+EK + K K+ KK RLE + KE K+
Sbjct: 319 NKALRQKEEKEKQRLEAKAAKEKERLEAKQKKEQERLEKQAEKE--KKEKERLEKKQREE 376
Query: 375 XXXXXXNLKKAEENRKKSEVVQVITNTTKLKRMRKKQLRFIEKRDTNKEVESSK 536
KK EE RKK E + K + +KKQ E+ + K+ E +K
Sbjct: 377 KDRLEKKEKKEEEKRKKEEEINAKIEEKKKREEKKKQ----EEEEKMKKKEQAK 426
>SB_10748| Best HMM Match : GETHR (HMM E-Value=1.5)
Length = 126
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +3
Query: 168 KQEKGKTIRGIPKSGRF--WKSKKEKFSTINKTKGLKQDFSKKTALRLELKRTK 323
K + G+T G K G+ WK+K+ K ++ K K KQ+ K+ + +++ K
Sbjct: 43 KTKDGRTKDGKTKDGKTKRWKNKRWKNKSMEKQKMEKQEMEKQEMEKQKMEEQK 96
>SB_21874| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 608
Score = 28.3 bits (60), Expect = 4.4
Identities = 45/181 (24%), Positives = 76/181 (41%), Gaps = 4/181 (2%)
Frame = +3
Query: 6 KIRTTNYTKILTK---IVMADETQAKVSSIVTDITKSR-DKYKEVTIANNAPVLSEKRKQ 173
K + NY K + + + M +E +K ++ V + TK++ DK K NN +K K+
Sbjct: 360 KGKKKNYNKSVEREDSMAMKEELHSKGTNTVKNKTKNKKDKTK-----NN----KDKTKE 410
Query: 174 EKGKTIRGIPKSGRFWKSKKEKFSTINKTKGLKQDFSKKTALRLELKRTKEISKQAXXXX 353
K KT K+ K+ K+K NK K K++ K + + K K+ +K+
Sbjct: 411 NKDKTKENKDKT----KNNKDKTKE-NKDK-TKENKDKTKENKDKTKENKDKTKE----N 460
Query: 354 XXXXXXXXXXXXXNLKKAEENRKKSEVVQVITNTTKLKRMRKKQLRFIEKRDTNKEVESS 533
N K +EN+ K++ + T K K K K TN+ + +
Sbjct: 461 KDKTKENKDKTKENKDKTKENKDKTKENKDKTKENKDKTKNNKDKTKENKDKTNENKDKT 520
Query: 534 K 536
K
Sbjct: 521 K 521
>SB_32504| Best HMM Match : TolA (HMM E-Value=0.52)
Length = 422
Score = 28.3 bits (60), Expect = 4.4
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = +3
Query: 159 EKRKQEKGKTIRGIPKSGRFWKSKKEKFSTINKTKGLKQDFSKKTALRLELKRTKEISKQ 338
EK+++EK + + + K +KE+ KTK +++ +K + E K +KE KQ
Sbjct: 136 EKKEKEKERMKKEEKHKEKTRKEEKEREKEKEKTKKEEKESREKEKTKKEEKESKEKDKQ 195
>SB_54976| Best HMM Match : MFS_1 (HMM E-Value=0.00064)
Length = 538
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 163 KESRRRGKQSEVSQNLAGSGSLKKKNSRPLIKQ 261
KE + K + +NL G LKK N R L+ +
Sbjct: 23 KEEEKNEKDQKSDENLCAKGCLKKINQRRLVSK 55
>SB_26233| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 463
Score = 27.9 bits (59), Expect = 5.8
Identities = 35/153 (22%), Positives = 63/153 (41%)
Frame = +3
Query: 69 AKVSSIVTDITKSRDKYKEVTIANNAPVLSEKRKQEKGKTIRGIPKSGRFWKSKKEKFST 248
AKV S +D RD E + + + E+ ++E+ K + + + KK K
Sbjct: 180 AKVISSDSDGEDDRDGNGEQSKSGSESDDDEEEEEEEEK------EEKKLTQKKKGKTPE 233
Query: 249 INKTKGLKQDFSKKTALRLELKRTKEISKQAXXXXXXXXXXXXXXXXXNLKKAEENRKKS 428
KT G K+ SK+ E + K+ ++ +K E RKK
Sbjct: 234 QKKTPGTKKAASKQRHPTDE--KRKDGQEKVEEKEKGEVEDAQTTEEEEKQKEEAERKKQ 291
Query: 429 EVVQVITNTTKLKRMRKKQLRFIEKRDTNKEVE 527
E ++ + + + RK+Q + +E++ KE E
Sbjct: 292 EKLEKLAKKKEELKERKRQEK-LEQKAKKKEKE 323
>SB_908| Best HMM Match : DUF1682 (HMM E-Value=3.1e-38)
Length = 326
Score = 27.9 bits (59), Expect = 5.8
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +3
Query: 402 KAEENRKKSEVVQVITNTTKLKRMRKKQLRFIEKRDTNKE 521
KA++NR++ E + + T L+R QLR EKR +KE
Sbjct: 227 KADKNRRELE--ENLLKQTHLQRQEAAQLRREEKRRADKE 264
>SB_59580| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 999
Score = 27.5 bits (58), Expect = 7.6
Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 8/128 (6%)
Frame = +3
Query: 102 KSRDKYKEVTIANNAPVLSEKRKQEKGKTI------RGIPKSGRFWKSKK-EKFSTINKT 260
+S ++ KE T+ L K+K+E+ K + + K WKSKK E+ ++
Sbjct: 801 QSWNQQKEETLKEKQERLKAKKKEEEEKELEKRSKTKDAKKYFESWKSKKDEELKEAHRA 860
Query: 261 KGLKQDFSKKTALRLELKRTKEI-SKQAXXXXXXXXXXXXXXXXXNLKKAEENRKKSEVV 437
K Q+ K+ E K+ K + SK++ KK E+ K+ +
Sbjct: 861 K--MQELKKQKQKEEEEKQDKTLSSKKSFENWKAKKDEYLKKELKEKKKREKTEKEKQEE 918
Query: 438 QVITNTTK 461
+ T K
Sbjct: 919 EKYEKTIK 926
>SB_41489| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 390
Score = 27.5 bits (58), Expect = 7.6
Identities = 15/62 (24%), Positives = 28/62 (45%)
Frame = +3
Query: 51 MADETQAKVSSIVTDITKSRDKYKEVTIANNAPVLSEKRKQEKGKTIRGIPKSGRFWKSK 230
M ++T + + K + +T +N V +K + KTI+ + K + WKS+
Sbjct: 126 MKEKTLMEKQEVALYTEKFEEFQSTLTKSNEMFVTFKKEMDKMTKTIKKLEKENKTWKSR 185
Query: 231 KE 236
E
Sbjct: 186 FE 187
>SB_34195| Best HMM Match : Init_tRNA_PT (HMM E-Value=2.7)
Length = 597
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/51 (25%), Positives = 28/51 (54%)
Frame = +3
Query: 189 IRGIPKSGRFWKSKKEKFSTINKTKGLKQDFSKKTALRLELKRTKEISKQA 341
++ +P+S WK + + + K + +K+D SK + + L + T+E Q+
Sbjct: 91 VKPVPRSWERWKLDALEPTDMRKDEKIKKDASKGSLVNLPIDLTEENLSQS 141
>SB_29057| Best HMM Match : Rad9 (HMM E-Value=9.3e-10)
Length = 336
Score = 27.5 bits (58), Expect = 7.6
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -2
Query: 262 FVLLMVENFSFLDFQNLPDFGIPLIVFPFSCFLFSLR 152
F + +++F+FLD +N P+ I F S FS++
Sbjct: 6 FTDIKIDDFTFLDCENRPNLCFTKIFFTTSIVTFSIQ 42
>SB_10926| Best HMM Match : Pkinase (HMM E-Value=3e-24)
Length = 1102
Score = 27.5 bits (58), Expect = 7.6
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 1/104 (0%)
Frame = +3
Query: 228 KKEKFSTINKTKGLKQDFSKKTALRLELKRTKEISKQAXXXXXXXXXXXXXXXXXNLKKA 407
+KE+ + KG++ D +K AL + I Q KA
Sbjct: 375 EKERDKIQIRQKGMEAD-AKGKALEQTESELRTIKGQIRERDHVIAEKERALARLERLKA 433
Query: 408 EENRKKSEVVQVITNTTKLKRMRKKQLRF-IEKRDTNKEVESSK 536
E +R+ E + TNTT L R+R++ R EKR T++ + ++
Sbjct: 434 EVDRQLDEERR--TNTTSLARLREEIARLREEKRGTDERLRRTE 475
>SB_43428| Best HMM Match : Glyco_hydro_47 (HMM E-Value=0)
Length = 758
Score = 27.5 bits (58), Expect = 7.6
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 393 NLKKAEENRKKSEVVQVITNTTKLKRMRKKQLRFIEKRDTNKEVESSK 536
N+K+ EE KK V+ KLK K+Q ++D NKE++ ++
Sbjct: 248 NMKEYEEQAKK--YVKPKKGPPKLKDRLKQQQSHENRQDNNKEIDIAR 293
>SB_41305| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 154
Score = 27.5 bits (58), Expect = 7.6
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +3
Query: 15 TTNYTKILTKIVMADETQAKVSSIVTDITKSRDKYKEVTIAN 140
TTN K +T + +++++T T S++ +TI N
Sbjct: 30 TTNNNKAMTTTTTNNNAMTTITNVITTTTTSKNAMTTITIIN 71
>SB_40923| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.29)
Length = 690
Score = 27.5 bits (58), Expect = 7.6
Identities = 21/97 (21%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Frame = +3
Query: 51 MADETQAKVSSIVTDITKSRDKYKEVTIANNAPVLSEKRKQEKGKTIRGIPKSGRF-WKS 227
M DE QAK +S++ D+ R+K E+ A ++QE+ + + ++ K+
Sbjct: 436 MLDEKQAKYTSMLKDLKNERNKIIELEEKLKALEEQNSQRQEEYDSNKSTHENELLVLKA 495
Query: 228 KKEKFSTINKTKGLKQDFSKKTALRLELKRTKEISKQ 338
K E+ + +TK ++ K+ + +L ++ + + ++
Sbjct: 496 KHEE--ELKETKQQLEELEKEKSEKLTKEQEEALEEE 530
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,717,174
Number of Sequences: 59808
Number of extensions: 207417
Number of successful extensions: 921
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -