Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_M22
         (548 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            26   0.71 
AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic acetylch...    26   0.71 
AB090818-1|BAC57911.1|  285|Anopheles gambiae gag-like protein p...    23   5.0  
AF295693-1|AAL55241.1|  786|Anopheles gambiae polyprotein protein.     23   8.8  

>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 26.2 bits (55), Expect = 0.71
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = +3

Query: 72   KVSSIVTDITKSRDKYKEVTIA---NNAPVLSEKRKQEKGK 185
            K++S+   +T+  DK+KE+  A   NN  +     K+E GK
Sbjct: 2881 KLNSVTQQVTQRLDKFKEIGKALKENNLKLAGTLIKEEVGK 2921


>AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 26.2 bits (55), Expect = 0.71
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = -2

Query: 283 EKSCLRPFVLLMVENFSFLDFQNLPDFG--IPLIVFPFSCFLFSLRTGALFAIVTSLYLS 110
           EK  L   +LL +  F  L  + LP     IPL+   F+C +F + +  +  +V   Y  
Sbjct: 261 EKLTLGVTILLSLTVFLNLVAETLPQVSDAIPLLGTYFNCIMFMVASSVVLTVVVLNYHH 320

Query: 109 R 107
           R
Sbjct: 321 R 321


>AB090818-1|BAC57911.1|  285|Anopheles gambiae gag-like protein
           protein.
          Length = 285

 Score = 23.4 bits (48), Expect = 5.0
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 160 RKESRRRGKQSEVSQNLAGSGSLKKKNSRPLIKQKVSNKTFPR 288
           R+E R+R KQ E  Q  + + +     S+P  KQK +    PR
Sbjct: 11  RRERRKRKKQREAEQAASLAANTPPSASQP--KQKPAPAFNPR 51


>AF295693-1|AAL55241.1|  786|Anopheles gambiae polyprotein protein.
          Length = 786

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +2

Query: 119 QRGHNSK*CARSKREKKAGEGENNQR 196
           Q GH  + C      + +GEGE  ++
Sbjct: 81  QPGHKKRDCKEFLNRESSGEGEKKKK 106


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 391,237
Number of Sequences: 2352
Number of extensions: 6674
Number of successful extensions: 27
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 50881347
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)