Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_M22
(548 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.38
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.38
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.38
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.67
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.67
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.67
AY127579-1|AAN02286.1| 405|Apis mellifera venom protease precur... 22 3.6
AF069739-1|AAC63272.2| 690|Apis mellifera translation initiatio... 22 4.7
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 21 6.2
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 21 8.2
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 21 8.2
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 21 8.2
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 25.4 bits (53), Expect = 0.38
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = -2
Query: 283 EKSCLRPFVLLMVENFSFLDFQNLPDFG--IPLIVFPFSCFLFSLRTGALFAIVTSLYLS 110
EK L +LL + F L + LP IPL+ F+C +F + + + ++ ++
Sbjct: 224 EKLTLGVTILLSLTVFLNLVAETLPQVSDAIPLLGSYFNCIMFMVASSVVLTVLVLIFHH 283
Query: 109 R 107
R
Sbjct: 284 R 284
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 25.4 bits (53), Expect = 0.38
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = -2
Query: 283 EKSCLRPFVLLMVENFSFLDFQNLPDFG--IPLIVFPFSCFLFSLRTGALFAIVTSLYLS 110
EK L +LL + F L + LP IPL+ F+C +F + + + ++ ++
Sbjct: 224 EKLTLGVTILLSLTVFLNLVAETLPQVSDAIPLLGSYFNCIMFMVASSVVLTVLVLIFHH 283
Query: 109 R 107
R
Sbjct: 284 R 284
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 25.4 bits (53), Expect = 0.38
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = -2
Query: 283 EKSCLRPFVLLMVENFSFLDFQNLPDFG--IPLIVFPFSCFLFSLRTGALFAIVTSLYLS 110
EK L +LL + F L + LP IPL+ F+C +F + + + ++ ++
Sbjct: 224 EKLTLGVTILLSLTVFLNLVAETLPQVSDAIPLLGSYFNCIMFMVASSVVLTVLVLIFHH 283
Query: 109 R 107
R
Sbjct: 284 R 284
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 24.6 bits (51), Expect = 0.67
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = -2
Query: 283 EKSCLRPFVLLMVENFSFLDFQNLPDFG--IPLIVFPFSCFLFSLRTGALFAIVTSLYLS 110
EK L +LL + F L +++P +PLI F+C +F + + + ++ ++
Sbjct: 224 EKLTLGVTILLSLTVFLNLVAESMPTTSDAVPLIGSYFNCIMFMVASSVVLTVLVLIFHH 283
Query: 109 R 107
R
Sbjct: 284 R 284
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 24.6 bits (51), Expect = 0.67
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = -2
Query: 283 EKSCLRPFVLLMVENFSFLDFQNLPDFG--IPLIVFPFSCFLFSLRTGALFAIVTSLYLS 110
EK L +LL + F L +++P +PLI F+C +F + + + ++ ++
Sbjct: 224 EKLTLGVTILLSLTVFLNLVAESMPTTSDAVPLIGSYFNCIMFMVASSVVLTVLVLIFHH 283
Query: 109 R 107
R
Sbjct: 284 R 284
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 24.6 bits (51), Expect = 0.67
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = -2
Query: 283 EKSCLRPFVLLMVENFSFLDFQNLPDFG--IPLIVFPFSCFLFSLRTGALFAIVTSLYLS 110
EK L +LL + F L +++P +PLI F+C +F + + + ++ ++
Sbjct: 224 EKLTLGVTILLSLTVFLNLVAESMPTTSDAVPLIGSYFNCIMFMVASSVVLTVLVLIFHH 283
Query: 109 R 107
R
Sbjct: 284 R 284
>AY127579-1|AAN02286.1| 405|Apis mellifera venom protease precursor
protein.
Length = 405
Score = 22.2 bits (45), Expect = 3.6
Identities = 7/18 (38%), Positives = 14/18 (77%)
Frame = +1
Query: 481 NNLDSLRNETLIRKLKVV 534
NN+ + +N L++K+K+V
Sbjct: 5 NNIAAFQNVVLVKKVKIV 22
>AF069739-1|AAC63272.2| 690|Apis mellifera translation initiation
factor 2 protein.
Length = 690
Score = 21.8 bits (44), Expect = 4.7
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 75 VSSIVTDITKSRDKYKEVTIANNAPVLSEKRKQEKGK 185
V +++ I K+ DKY+E TI P+L K GK
Sbjct: 78 VLNVLYFINKN-DKYEENTILTTMPLLINVVKYLGGK 113
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 21.4 bits (43), Expect = 6.2
Identities = 8/26 (30%), Positives = 15/26 (57%)
Frame = +3
Query: 213 RFWKSKKEKFSTINKTKGLKQDFSKK 290
++WK ++ FS + L DF++K
Sbjct: 90 QYWKDERLAFSQEEEVLTLSGDFAEK 115
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 21.0 bits (42), Expect = 8.2
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = -2
Query: 241 NFSFLDFQNLPDFGIPLIVFPFSCFLFSLRTGALFAIVTSLYLSR 107
++ FL F DF + L LR L ++V L LSR
Sbjct: 180 DYIFLIFNQFQDFSESFQILHAGRALRILRLAKLLSLVRLLRLSR 224
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 21.0 bits (42), Expect = 8.2
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = -2
Query: 241 NFSFLDFQNLPDFGIPLIVFPFSCFLFSLRTGALFAIVTSLYLSR 107
++ FL F DF + L LR L ++V L LSR
Sbjct: 180 DYIFLIFNQFQDFSESFQILHAGRALRILRLAKLLSLVRLLRLSR 224
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 21.0 bits (42), Expect = 8.2
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = -2
Query: 241 NFSFLDFQNLPDFGIPLIVFPFSCFLFSLRTGALFAIVTSLYLSR 107
++ FL F DF + L LR L ++V L LSR
Sbjct: 180 DYIFLIFNQFQDFSESFQILHAGRALRILRLAKLLSLVRLLRLSR 224
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,523
Number of Sequences: 438
Number of extensions: 2211
Number of successful extensions: 13
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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