Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_M21
         (370 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL683834-1|CAI39587.1|  791|Homo sapiens glutamate receptor, ion...    29   6.2  
AL596135-1|CAI39475.1|  791|Homo sapiens glutamate receptor, ion...    29   6.2  
AB033046-1|BAA86534.1|  791|Homo sapiens KIAA1220 protein protein.     29   6.2  

>AL683834-1|CAI39587.1|  791|Homo sapiens glutamate receptor,
           ionotropic, delta 1 protein.
          Length = 791

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 179 SIAFIWAVLNVDTIMECIYLVLERLYNSNKC 271
           S A ++ +L +  ++ C+   LE  +NSN+C
Sbjct: 612 SFAGVFCILAIGLLLACLVAALELWWNSNRC 642


>AL596135-1|CAI39475.1|  791|Homo sapiens glutamate receptor,
           ionotropic, delta 1 protein.
          Length = 791

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 179 SIAFIWAVLNVDTIMECIYLVLERLYNSNKC 271
           S A ++ +L +  ++ C+   LE  +NSN+C
Sbjct: 612 SFAGVFCILAIGLLLACLVAALELWWNSNRC 642


>AB033046-1|BAA86534.1|  791|Homo sapiens KIAA1220 protein protein.
          Length = 791

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 179 SIAFIWAVLNVDTIMECIYLVLERLYNSNKC 271
           S A ++ +L +  ++ C+   LE  +NSN+C
Sbjct: 612 SFAGVFCILAIGLLLACLVAALELWWNSNRC 642


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,040,650
Number of Sequences: 237096
Number of extensions: 583949
Number of successful extensions: 998
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2363825726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)